PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G30984

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 436aa MW: 48907.6 Da PI: 10.0153

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G30984	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.7	9.6e-14	75	129	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k++++ + +++Lee+ kn+yp+ +++ee+A++l L+ +q+++W qN+R+k++ Ro05_G30984 75 SKKRKYDGYTIQQLEEFITKNPYPNDNQKEEMARQLLLQPKQITYWIQNHRTKRR 129 677899999*****999********************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MSRQVRSFDE LIQPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP RNPRSPEEDL 60 DPSSGSDISP SRFKSKKRKY DGYTIQQLEE FITKNPYPND NQKEEMARQL LLQPKQITYW 120 IQNHRTKRRA EFFRSENDAL KKEVSKLHVK LKGYEQAFAN TTCLVCGGPR ITTKGLDYRP 180 QVLDAGPNIE KGKSPLGFSE AFQQPRKDFL HTKNGQDLVA NYGRTGHNGP SGSSFVDFCE 240 RRSSKGTIFS TVSSLWRLTS PRDVFEFLQN LQTQHPWDIL AKGEVVEEVM RIITSPNPGN 300 YISMLRIDGA NSGTSKRLIL QESCVNSIES YLVHTKINFF EMKAVLNGAN PDSVALLPSG 360 FAIIPNVAAT KGVGGSHGTN TDGTVLTIAI QKVVHLGRNL KNFNKPLTEA KKRIRAIIAG 420 ITRAALKDHQ QLAGLY

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MSRQVRSFDE LIQPSNLDYE GWLGELPRGA VKNYDMPKEK QLQISSWIGP RNPRSPEEDL  60
DPSSGSDISP SRFKSKKRKY DGYTIQQLEE FITKNPYPND NQKEEMARQL LLQPKQITYW  120
IQNHRTKRRA EFFRSENDAL KKEVSKLHVK LKGYEQAFAN TTCLVCGGPR ITTKGLDYRP  180
QVLDAGPNIE KGKSPLGFSE AFQQPRKDFL HTKNGQDLVA NYGRTGHNGP SGSSFVDFCE  240
RRSSKGTIFS TVSSLWRLTS PRDVFEFLQN LQTQHPWDIL AKGEVVEEVM RIITSPNPGN  300
YISMLRIDGA NSGTSKRLIL QESCVNSIES YLVHTKINFF EMKAVLNGAN PDSVALLPSG  360
FAIIPNVAAT KGVGGSHGTN TDGTVLTIAI QKVVHLGRNL KNFNKPLTEA KKRIRAIIAG  420
ITRAALKDHQ QLAGLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	410	416	AKKRIRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	4e-34	HD-ZIP family protein