PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G30550

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 580aa MW: 64037.9 Da PI: 8.4499

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G30550	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	264	320	2	55
HHHHHHHHHHHHHHHHHH.......HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa.......feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR + a f+ Lrel+P++ ++K +Ka+ L +++eYI++Lq Ro05_G30550 264 RSKHSATEQRRRTSNRMAlknnyyrFQMLRELIPHS----DQKRDKASFLLEVIEYIQYLQ 320 7899999999997655432222233899*****9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MELPQPRPFG GEGRKPTHDF LSLYTSHSTA QQDPRPPSQG GYLETHDFLQ PLERMGKSCA 60 KEETSVEMVS PSRTSVEKPA QRPTSVEHIL PGGIGTYSIS HISYFNQRVP KPEENVFPVA 120 PQASSTHERN DENSNCSSYA GSGFTLWDES AANKGKTGKE NVAERPALRG QWTSSERPSQ 180 SSSTNNRNCF SSQSSGQKNL SFMEMMKSAA KGCTQEDELD DEEEFALKKE MSTTTTTTAT 240 TPYNGELRVK VDVKSSDQKA NTPRSKHSAT EQRRRTSNRM ALKNNYYRFQ MLRELIPHSD 300 QKRDKASFLL EVIEYIQYLQ EKVTKYEGPY QGWNHDPAKL MPWHDLEQRN NHKLGESYCD 360 QSRGMNGGSG PALVFSAAKF EEKATSVSPT IPARAQNPVE SDTSTETTFR AKDHHNGITN 420 KAIPCPLSMQ SHFSTPVRSG GAAPQFPPRL PSDAENTSSH PRSMLFPTKS CTADAGATSD 480 KLKEHELTIE GGRINISSAY SQGLLNTLTQ ALQNSGVDLS QASISVQIEL GKQASGRTTI 540 PKSIVKGNEI PSMNPGKKHS RNSTGEDSEQ AQKKLRTGRN

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MELPQPRPFG GEGRKPTHDF LSLYTSHSTA QQDPRPPSQG GYLETHDFLQ PLERMGKSCA  60
KEETSVEMVS PSRTSVEKPA QRPTSVEHIL PGGIGTYSIS HISYFNQRVP KPEENVFPVA  120
PQASSTHERN DENSNCSSYA GSGFTLWDES AANKGKTGKE NVAERPALRG QWTSSERPSQ  180
SSSTNNRNCF SSQSSGQKNL SFMEMMKSAA KGCTQEDELD DEEEFALKKE MSTTTTTTAT  240
TPYNGELRVK VDVKSSDQKA NTPRSKHSAT EQRRRTSNRM ALKNNYYRFQ MLRELIPHSD  300
QKRDKASFLL EVIEYIQYLQ EKVTKYEGPY QGWNHDPAKL MPWHDLEQRN NHKLGESYCD  360
QSRGMNGGSG PALVFSAAKF EEKATSVSPT IPARAQNPVE SDTSTETTFR AKDHHNGITN  420
KAIPCPLSMQ SHFSTPVRSG GAAPQFPPRL PSDAENTSSH PRSMLFPTKS CTADAGATSD  480
KLKEHELTIE GGRINISSAY SQGLLNTLTQ ALQNSGVDLS QASISVQIEL GKQASGRTTI  540
PKSIVKGNEI PSMNPGKKHS RNSTGEDSEQ AQKKLRTGRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-118	bHLH family protein