PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G27470

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 395aa MW: 45056.1 Da PI: 4.174

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G27470	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	61.1	3.5e-19	9	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pG rF P ++elv yLk+ ++g+k++ + ++d+y + ePw++ +++k+ +k++yfF++++k t++r +r++ sg+W+a + k Ro05_G27470 9 LPGERFCPMEDELVLLYLKPMLNGQKVPGRGRvVFDCDLYGHqEPWEIWETYKTrrpndlrLNKDLYFFTQHKKMGLTDSRIRRTVGSGTWRADDSGK 106 589*********************88765449998879753333334333334588**********************999988 PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v s +g +vglkk + ++ + ++ W+m e++l Ro05_G27470 107 IVNSVeTGLVVGLKKRYSYK--NEASVHHGCWIMFEFEL 143 7777657778**9998..45555799*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MEESRGNQLP GERFCPMEDE LVLLYLKPML NGQKVPGRGR VVFDCDLYGH QEPWEIWETY 60 KTRRPNDLRL NKDLYFFTQH KKMGLTDSRI RRTVGSGTWR ADDSGKIVNS VETGLVVGLK 120 KRYSYKNEAS VHHGCWIMFE FELLDRSKKQ KKNNDYVLCL LRKNGEPQSE KKRKQLPKKE 180 VLGENYVCDD GENSNTEQEE LLEPQVKRQR TVQPIDNAPV VPIPSGYENY AFAAELEKSL 240 PCFEDDNVPS EAEAIAFQGE ENGGLQQLAA EVQSDHEENW GPSFGDDHGI LNPLPENEND 300 VFAAELEDLL PCFEDDNVPS EAEPNGFQGE ENGGLQQLAA EMQSGLEENW PGLSFGDDLG 360 IVYPLPEEDF LWEEMVEEMG IVQMEELVLN GDMWQ

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MEESRGNQLP GERFCPMEDE LVLLYLKPML NGQKVPGRGR VVFDCDLYGH QEPWEIWETY  60
KTRRPNDLRL NKDLYFFTQH KKMGLTDSRI RRTVGSGTWR ADDSGKIVNS VETGLVVGLK  120
KRYSYKNEAS VHHGCWIMFE FELLDRSKKQ KKNNDYVLCL LRKNGEPQSE KKRKQLPKKE  180
VLGENYVCDD GENSNTEQEE LLEPQVKRQR TVQPIDNAPV VPIPSGYENY AFAAELEKSL  240
PCFEDDNVPS EAEAIAFQGE ENGGLQQLAA EVQSDHEENW GPSFGDDHGI LNPLPENEND  300
VFAAELEDLL PCFEDDNVPS EAEPNGFQGE ENGGLQQLAA EMQSGLEENW PGLSFGDDLG  360
IVYPLPEEDF LWEEMVEEMG IVQMEELVLN GDMWQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-13	NAC family protein