PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G27233

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 508aa MW: 58006.8 Da PI: 4.4143

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G27233	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64.1	4.2e-20	5	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikev.diy.kvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p+GfrFhP deelv +yL+++ v g++++ +++e+ d y ++ePw + + k+ +e + ++ F++r+k +++gk+ r++ sg+W+a+ ++ Ro05_G27233 5 PVGFRFHPLDEELVGYYLHNRsVLGHQFRP-VFFAECpDFYgESEPWVIWEsyggsKL-EEGEPLHLFTERHKLNPKGKHFDRKVGSGTWSAQYA-RD 99 89**************987466777666.5688888988467*742443222.244567**********************9977.88 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v++ ++ l g+k+ + + g + ++ W+m+ey++ Ro05_G27233 100 VVE-DSVLLGVKREFRYE-GGVCSNQNNAWLMQEYEI 134 888.899*****98.555555899*****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MEGYPVGFRF HPLDEELVGY YLHNRSVLGH QFRPVFFAEC PDFYGESEPW VIWESYGGSK 60 LEEGEPLHLF TERHKLNPKG KHFDRKVGSG TWSAQYARDV VEDSVLLGVK REFRYEGGVC 120 SNQNNAWLMQ EYEITENDFT VLCTLRKNPK RPAGPSSTTS TTTQRRRNVQ KKTSTVDDKK 180 RKRNPTLVHS VETVVDGDDN TKAKRLRIEQ RAATTTSKAA LNFSGDYGMH FPRNQDNKNG 240 GGVMLFSNSQ NPDDIAVFDG YQNADNDSSQ LQPSTIADYS AEQSSTGNFS SFNDDKQGGA 300 SEDICSSLPG IIDHNVFDDV TDRVHYADAD SSSQTRQQSS PSSSASHYDD QVVHVQEDIY 360 NCHEQQLIFS PTGLFDNNPI ASFDQFLASG EEEQQQYSDS SLEPQRQLEP NKRCEEEEQP 420 QQQDQKLLFS PSHCHEQQLL SDDHDFDIPL DYAYFESDEF NGFYIDEDQP RALQWLDSDD 480 QNSDIFQSSR SWGFYPMTYW FFDWVGSS

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MEGYPVGFRF HPLDEELVGY YLHNRSVLGH QFRPVFFAEC PDFYGESEPW VIWESYGGSK  60
LEEGEPLHLF TERHKLNPKG KHFDRKVGSG TWSAQYARDV VEDSVLLGVK REFRYEGGVC  120
SNQNNAWLMQ EYEITENDFT VLCTLRKNPK RPAGPSSTTS TTTQRRRNVQ KKTSTVDDKK  180
RKRNPTLVHS VETVVDGDDN TKAKRLRIEQ RAATTTSKAA LNFSGDYGMH FPRNQDNKNG  240
GGVMLFSNSQ NPDDIAVFDG YQNADNDSSQ LQPSTIADYS AEQSSTGNFS SFNDDKQGGA  300
SEDICSSLPG IIDHNVFDDV TDRVHYADAD SSSQTRQQSS PSSSASHYDD QVVHVQEDIY  360
NCHEQQLIFS PTGLFDNNPI ASFDQFLASG EEEQQQYSDS SLEPQRQLEP NKRCEEEEQP  420
QQQDQKLLFS PSHCHEQQLL SDDHDFDIPL DYAYFESDEF NGFYIDEDQP RALQWLDSDD  480
QNSDIFQSSR SWGFYPMTYW FFDWVGSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	183	RRRNVQKKTSTVDDKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62380.1	4e-14	NAC family protein