PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G26898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 23674.7 Da PI: 9.0073 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.9 | 3.7e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien rqvtf+kRr+g+lKKA+ELSvLCda++ v+i+ss+gkl+e Ro05_G26898 9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIYSSHGKLFEL 57 68********************************************996 PP | |||||||
2 | K-box | 61.4 | 3.5e-21 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + e+++ + ++e++ Lk+eie Lq+ +R + G + +++sl eLq Le++Le + ++Rs K+++ll++i+ l++ e l +nk+L+ k+ee Ro05_G26898 84 AMETQTVEAKKEINLLKQEIEILQKGLRYMFGGGAGTMSLDELQVLEKHLEIWIYHVRSAKMDILLQEIQLLRNSEGILTAANKYLQDKIEE 175 567888999********************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLIYSS HGKLFELATK 60 GTMQGLIEKY MKMKPARVPQ AETAMETQTV EAKKEINLLK QEIEILQKGL RYMFGGGAGT 120 MSLDELQVLE KHLEIWIYHV RSAKMDILLQ EIQLLRNSEG ILTAANKYLQ DKIEENSGVT 180 NLIPMASDSP YPLTIPSDDI NSILGNNFGL N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-81 | MIKC_MADS family protein |