PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G26667 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 753aa MW: 83877.6 Da PI: 5.8725 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4e-07 | 135 | 157 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff+r G+C+ d+C+F+Hgp Ro05_G26667 135 VPCIFFQR-GFCSKADKCPFSHGP 157 69******.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 753 aa Download sequence |
MVVGATPKPQ PQSQPQQLSQ QQPQKLPQQQ PETSAEEEAL KRNTDCVYFL ASPVSCKKGG 60 ECEYRHSEHA LYNPRDCWFW LNGNCLNLKC SFRHPPLDGL LGSPAASSAG PSLPLSHTVT 120 TPATHATFNT SKQAVPCIFF QRGFCSKADK CPFSHGPNPV TSSKVSQAPA ATHGTEPSSL 180 KKVFGGIEKC TQEMKNPQLS ASKIVGVPPQ AKSAPKVETV RPRNGVGIER NVLPTRGLDD 240 EALRYKSRSV LPAMNGDSTG QANHILQAHV SENHGFQNGK DVDEHLRESS PGFDVLVDDE 300 LGDSDYYHGE DQFGRARGHD GRNLNSVNDY DLDRPADYNS MADGERERFR DPRGYDPYEH 360 VQGRYAWDQH RASSERLLVG PAHPERSGYR KSDSPDHIDG ADLRHILSKH RRGNGLRSII 420 SNDYDGRVDE RKNRSRRDSQ QLPSHEGSLS SRLRGRIKLP GGSSPVNGSD LHQEREADRG 480 RNHDRSRDRL SPRRAQIMSH QGRLRDRIHG RVQEDYNNEG RNFGAPRMRR EIMDDRSIEF 540 SRPKRLSELK GGIDAENWEH PYLGKTNNVI MDNHQQSEGD LSFEGPKPLS EILKRKREAE 600 AAAASGSRKR SSVNKQGNNE KESTVSNPGG PDPEIGAVTE MHNRKASVAK EETKSATADA 660 VGTENEKIDV APGQSSHGHN DGELETEDGM IYDETLEDHE LEGEDQREGE YDYEQGEDGE 720 YNYEEGENAD GEEEYLEEED GDDFAKKIGV LFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 431 | 438 | RKNRSRRD |
2 | 521 | 530 | RNFGAPRMRR |