PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G26667
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 753aa    MW: 83877.6 Da    PI: 5.8725
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G26667genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-07135157427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ff+r G+C+  d+C+F+Hgp
  Ro05_G26667 135 VPCIFFQR-GFCSKADKCPFSHGP 157
                  69******.*************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    
MVVGATPKPQ PQSQPQQLSQ QQPQKLPQQQ PETSAEEEAL KRNTDCVYFL ASPVSCKKGG  60
ECEYRHSEHA LYNPRDCWFW LNGNCLNLKC SFRHPPLDGL LGSPAASSAG PSLPLSHTVT  120
TPATHATFNT SKQAVPCIFF QRGFCSKADK CPFSHGPNPV TSSKVSQAPA ATHGTEPSSL  180
KKVFGGIEKC TQEMKNPQLS ASKIVGVPPQ AKSAPKVETV RPRNGVGIER NVLPTRGLDD  240
EALRYKSRSV LPAMNGDSTG QANHILQAHV SENHGFQNGK DVDEHLRESS PGFDVLVDDE  300
LGDSDYYHGE DQFGRARGHD GRNLNSVNDY DLDRPADYNS MADGERERFR DPRGYDPYEH  360
VQGRYAWDQH RASSERLLVG PAHPERSGYR KSDSPDHIDG ADLRHILSKH RRGNGLRSII  420
SNDYDGRVDE RKNRSRRDSQ QLPSHEGSLS SRLRGRIKLP GGSSPVNGSD LHQEREADRG  480
RNHDRSRDRL SPRRAQIMSH QGRLRDRIHG RVQEDYNNEG RNFGAPRMRR EIMDDRSIEF  540
SRPKRLSELK GGIDAENWEH PYLGKTNNVI MDNHQQSEGD LSFEGPKPLS EILKRKREAE  600
AAAASGSRKR SSVNKQGNNE KESTVSNPGG PDPEIGAVTE MHNRKASVAK EETKSATADA  660
VGTENEKIDV APGQSSHGHN DGELETEDGM IYDETLEDHE LEGEDQREGE YDYEQGEDGE  720
YNYEEGENAD GEEEYLEEED GDDFAKKIGV LFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431438RKNRSRRD
2521530RNFGAPRMRR