PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G26652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ARR-B | ||||||||
Protein Properties | Length: 619aa MW: 69293.6 Da PI: 6.5412 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87 | 1.8e-27 | 375 | 429 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++ Ro05_G26652 375 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKTEGLTRHNVASHLQKYRMH 429 5689*****************.********************************96 PP | |||||||
2 | Myb_DNA-binding | 43.6 | 6.8e-14 | 378 | 427 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ Ro05_G26652 378 VDWTPELHKKFVHAVEQLGVDqaIPSRILELMKtEGLTRHNVASHLQKYR 427 57***********************************************7 PP | |||||||
3 | Response_reg | 29.9 | 2.8e-11 | 83 | 189 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSE.HHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmd.GlellkeireeepklpiivvtahgeeedalealkaGa 94 vl+ d++ + +r+ le +y +v+++ + +eal + + + +++ ++ ++ +++d +++l+ +++ +lpii+ + +++ +++ +Ga Ro05_G26652 83 VLLLDKDTSSSAEIRSKLEAMDY-IVTTFYNETEALSAFscNPESFHVAIVEVNASNVDwVFQFLE---TAK-DLPIIMTSNIHCLNTMMKCIALGA 174 7999*******************.***************655566************651555554...444.799999998888************ PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp ++++l++ Ro05_G26652 175 VEFLRKPLSEDKLRN 189 ************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence |
MVTVQKSKKA PLYLSSFPNA AKEVEEDLNG GGEKKPLLYS FEPSLRWNKI QHLHGLRNDA 60 KSAMVCTAND LEGWKDFPKG LRVLLLDKDT SSSAEIRSKL EAMDYIVTTF YNETEALSAF 120 SCNPESFHVA IVEVNASNVD WVFQFLETAK DLPIIMTSNI HCLNTMMKCI ALGAVEFLRK 180 PLSEDKLRNI WQHVVHKAFN TGEKGVSESV KPVKESVVPM LQPKLENEPP KCKISIETEN 240 VSRALEHDHE QSTGSDKYPA PSTPQIKQGS RLLDDGDCQD QTNCLSEKES GEHDGESKSV 300 ETTCGNAEDT LQISEPQMPE KIAVKQEKDS ADVSKNDINL SQPLIRDSTN DTVCATENLT 360 KASGLNHSYK SSRKKMKVDW TPELHKKFVH AVEQLGVDQA IPSRILELMK TEGLTRHNVA 420 SHLQKYRMHK RHILPKDEDR RLLHPRDPTQ MSYYPHKPIM AFPPYHYNNA VSMPSVYPMW 480 GQPTGHPANI QMWGPPSYPP WQPSESWHWK PSYPGLHADA WGCPVMPQPL QGGYSPYPQI 540 AAGVHNTNVV DNGCSIPLDS SELHPSEEII DKVVKEAMSK PWLPLPLGLK LPSTEGVLAE 600 LSRQGICNIP PQNNGSSFH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.3 | 1e-144 | ARR-B family protein |