PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G26396
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 644aa    MW: 72792.8 Da    PI: 5.7555
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G26396genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-101262011799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +lp+k++++hg +  +++ l+    +g ++ +kl  ++++++ ++ kGW+eF k+   +++D ++F ++g+s+f  +v++f++
  Ro05_G26396 126 MLPRKYVKNHGDELSNPVHLK---FRGTEFAMKL--KRYKDEAWFDKGWEEFSKSCSFESNDLLIFGYEGNSTF--RVSLFDR 201
                  79*****99986644554444...57899*****..**********************************9999..9999986 PP
2B349.67.2e-16329418194
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  ff +++p       +l+lp +f+++h  +  es ++tl+ ++gr W v+l+ ++++ +  ++ GW eF ++n+Lk+gD++ F+l+++ +  + v
  Ro05_G26396 329 FFRIEVPCTDVHGMILWLPFEFMRTHHVN--ESGEVTLQISDGRIWHVELKCENSRAE--FKYGWWEFMQDNNLKVGDVCAFMLIDNVRLLFEV 418
                  5666666677777889**********877..4558***************76666666..899*********************9876554555 PP
3B341.42.5e-134735461692
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    lp kf ++h  + e +  +   +   r+W+vk+  + ++ r  +++GW+ Fv++n+L++gD++ F l++ ++ ++
  Ro05_G26396 473 RLLPSKFSQTHLTS-EATYAILCVSGGKRTWSVKF--NYGGARAKFQSGWSIFVRDNNLNVGDVCKFVLIDANRLSF 546
                  369****9999444.4556788888888*******..88888899***********************997555443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    
MTGCDHNATT HIPIKNYSYG SVTNNNDIHE PNRLVWNGVL YMVLLRSITQ AMALECLERT  60
VHMLQVEDYM ASGNSMYMGG YGGLYGAFSM MYGAVSLGMY GGGMYNSDLG GPMGGCGMDM  120
GGPYEMLPRK YVKNHGDELS NPVHLKFRGT EFAMKLKRYK DEAWFDKGWE EFSKSCSFES  180
NDLLIFGYEG NSTFRVSLFD RMPELKENDE TDFQLRPLPH SRTRTSVCGG KAEIQEGAPS  240
LEKLKTKSNA THRSKSELKR KRDLPAEKND CEAEIDLNLT KGPKNSEMKR KQDFPGKENW  300
GSKSATQSFQ KRTSEAMQRA NAFKSEYPFF RIEVPCTDVH GMILWLPFEF MRTHHVNESG  360
EVTLQISDGR IWHVELKCEN SRAEFKYGWW EFMQDNNLKV GDVCAFMLID NVRLLFEVVI  420
FHTDRTIEPL NCILPPDNDD KEDGNDNDED NNNDASNDNP SFKIVIQPSY IQRLLPSKFS  480
QTHLTSEATY AILCVSGGKR TWSVKFNYGG ARAKFQSGWS IFVRDNNLNV GDVCKFVLID  540
ANRLSFEVVI EAGNSTLLLD IDNDDGNNNE DDDVELVESS LAARPHKRKR TGCNIEAQIS  600
NTKDNLPSGF AKEHLTEQPS EVSLCGSNGK TLSVKFHNVT RATF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-24B3 family protein