PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G25784

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 928aa MW: 107002 Da PI: 6.8305

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G25784	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	238	257	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Ro05_G25784 238 CPFHLKTGACRFGQRCSRVH 257 ******************99 PP
2	zf-CCCH	21.5	4.2e-07	413	440	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C + ++ tC++G C+F+H+ Ro05_G25784 413 WKVAICGEYVKSRykTCSRGTACNFIHC 440 799*****99999**********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 928 aa Download sequence
MDHSEPPADK EGGGEGEGEG DGGVQPKTEC VTAMSRKEKR KAMKKMKRKQ TRKEIALEER 60 QEEEKARQEE EARLKDPQEL KKMREEEEEE AEKLESERKK FEERERAWIE AMEIQKKKRI 120 EEEEERRIKA LEDEESHKQQ IENANEDDDW EYVEEGPAEI IWQGNEIIVK KKRVKVPKRN 180 KDQQTRKEDS DRPTSNPLPP QSEAFSDYKN ASLSAQQLIE TVAEQVPHFG TEQDKAHCPF 240 HLKTGACRFG QRCSRVHFYP DKSSTLLIKN MYNGPGLAWE QDEGLEYTDE EVERCYEEFY 300 EDVHTEFLKF GEIINFKVCR NGSFHLRGNV YVQYSALESA VLAHQSINGR YFAGKQRHKE 360 ASFLRLLKWF VLPHSHRLWD NAICKLLRLG QAGVVDATSA VSISCEFINV TRWKVAICGE 420 YVKSRYKTCS RGTACNFIHC FRNPGGDYEW ADSDRPPPKY WVEKMVALFG YSNAYEKQMM 480 EDNSGQLRNS SKMSMMDSGR YGLRRSSSRE RSYSSFTGSG RRYYNENYAL KGTSNQRPTG 540 RGKTLDGDQC EENTYLKDYN HRKSRKYYVE SDGELLDTDV EMDRDRYHGH TRKSSRQENR 600 DHKNKTYETE SDGHLLDRGR NRVTEHGNTR TSSSQQRKAG AQDDYGDCEK KVCEVDGDWS 660 TRDKDGDSYR DSRRNSGHKR KVGYADNHKD RNGRAHDSDG EWSDSNKKGD EHHSIRKSSG 720 HSGNASKCLK QGECSTRSCT AELSEDSLEK DAEKDTSHAR KQSKHWDKVS DKSDGDRAPA 780 QGLRHSADRL SLQVEEVDSP VKNLRSDGTP ESSSLDQHYL RCISDVHIDK QDRWEPESGS 840 AEIYHSSKGK AGSSESYESG RPGQYNERDE SSEFDSKLYY DDKVGKADHY ESGEVTCSKN 900 RKSRRKSTKN DDDGDNRKRS RGSSQIRL

Sequence ? help Back to Top

Protein Sequence Length: 928 aa Download sequence

MDHSEPPADK EGGGEGEGEG DGGVQPKTEC VTAMSRKEKR KAMKKMKRKQ TRKEIALEER  60
QEEEKARQEE EARLKDPQEL KKMREEEEEE AEKLESERKK FEERERAWIE AMEIQKKKRI  120
EEEEERRIKA LEDEESHKQQ IENANEDDDW EYVEEGPAEI IWQGNEIIVK KKRVKVPKRN  180
KDQQTRKEDS DRPTSNPLPP QSEAFSDYKN ASLSAQQLIE TVAEQVPHFG TEQDKAHCPF  240
HLKTGACRFG QRCSRVHFYP DKSSTLLIKN MYNGPGLAWE QDEGLEYTDE EVERCYEEFY  300
EDVHTEFLKF GEIINFKVCR NGSFHLRGNV YVQYSALESA VLAHQSINGR YFAGKQRHKE  360
ASFLRLLKWF VLPHSHRLWD NAICKLLRLG QAGVVDATSA VSISCEFINV TRWKVAICGE  420
YVKSRYKTCS RGTACNFIHC FRNPGGDYEW ADSDRPPPKY WVEKMVALFG YSNAYEKQMM  480
EDNSGQLRNS SKMSMMDSGR YGLRRSSSRE RSYSSFTGSG RRYYNENYAL KGTSNQRPTG  540
RGKTLDGDQC EENTYLKDYN HRKSRKYYVE SDGELLDTDV EMDRDRYHGH TRKSSRQENR  600
DHKNKTYETE SDGHLLDRGR NRVTEHGNTR TSSSQQRKAG AQDDYGDCEK KVCEVDGDWS  660
TRDKDGDSYR DSRRNSGHKR KVGYADNHKD RNGRAHDSDG EWSDSNKKGD EHHSIRKSSG  720
HSGNASKCLK QGECSTRSCT AELSEDSLEK DAEKDTSHAR KQSKHWDKVS DKSDGDRAPA  780
QGLRHSADRL SLQVEEVDSP VKNLRSDGTP ESSSLDQHYL RCISDVHIDK QDRWEPESGS  840
AEIYHSSKGK AGSSESYESG RPGQYNERDE SSEFDSKLYY DDKVGKADHY ESGEVTCSKN  900
RKSRRKSTKN DDDGDNRKRS RGSSQIRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	119	RKKFEERERAWIEAMEIQKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-138	C3H family protein