PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G25784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C3H
Protein Properties Length: 928aa    MW: 107002 Da    PI: 6.8305
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G25784genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06238257625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+f+++tG C++G rC++ H
  Ro05_G25784 238 CPFHLKTGACRFGQRCSRVH 257
                  ******************99 PP

2zf-CCCH21.54.2e-07413440126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                  +k ++C  + ++   tC++G  C+F+H+
  Ro05_G25784 413 WKVAICGEYVKSRykTCSRGTACNFIHC 440
                  799*******99999************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    
MDHSEPPADK EGGGEGEGEG DGGVQPKTEC VTAMSRKEKR KAMKKMKRKQ TRKEIALEER  60
QEEEKARQEE EARLKDPQEL KKMREEEEEE AEKLESERKK FEERERAWIE AMEIQKKKRI  120
EEEEERRIKA LEDEESHKQQ IENANEDDDW EYVEEGPAEI IWQGNEIIVK KKRVKVPKRN  180
KDQQTRKEDS DRPTSNPLPP QSEAFSDYKN ASLSAQQLIE TVAEQVPHFG TEQDKAHCPF  240
HLKTGACRFG QRCSRVHFYP DKSSTLLIKN MYNGPGLAWE QDEGLEYTDE EVERCYEEFY  300
EDVHTEFLKF GEIINFKVCR NGSFHLRGNV YVQYSALESA VLAHQSINGR YFAGKQRHKE  360
ASFLRLLKWF VLPHSHRLWD NAICKLLRLG QAGVVDATSA VSISCEFINV TRWKVAICGE  420
YVKSRYKTCS RGTACNFIHC FRNPGGDYEW ADSDRPPPKY WVEKMVALFG YSNAYEKQMM  480
EDNSGQLRNS SKMSMMDSGR YGLRRSSSRE RSYSSFTGSG RRYYNENYAL KGTSNQRPTG  540
RGKTLDGDQC EENTYLKDYN HRKSRKYYVE SDGELLDTDV EMDRDRYHGH TRKSSRQENR  600
DHKNKTYETE SDGHLLDRGR NRVTEHGNTR TSSSQQRKAG AQDDYGDCEK KVCEVDGDWS  660
TRDKDGDSYR DSRRNSGHKR KVGYADNHKD RNGRAHDSDG EWSDSNKKGD EHHSIRKSSG  720
HSGNASKCLK QGECSTRSCT AELSEDSLEK DAEKDTSHAR KQSKHWDKVS DKSDGDRAPA  780
QGLRHSADRL SLQVEEVDSP VKNLRSDGTP ESSSLDQHYL RCISDVHIDK QDRWEPESGS  840
AEIYHSSKGK AGSSESYESG RPGQYNERDE SSEFDSKLYY DDKVGKADHY ESGEVTCSKN  900
RKSRRKSTKN DDDGDNRKRS RGSSQIRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198119RKKFEERERAWIEAMEIQKKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-138C3H family protein