PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G24561
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 601aa    MW: 68198.6 Da    PI: 4.8685
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G24561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.12.2e-16381685127
          NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.k....kvkaeekewyfFskrdkkya...tgkrknratksgyWkatgkdkevl 93 
                  + F+Ptd++lv ++L++++     ++  +i+++d++   ePw++  k      k + +e+yfF+++ kk +   tg r nr++  g+W ++ + k v+
  Ro05_G24561  38 MSFSPTDSQLVRYFLCNSAP----NF--IITDCDLFGQeEPWEIWdKylgfFNKYNPDELYFFMSSLKKLSpkaTGCRINRTIGGGTWAQKETLKLVY 129
                  46*************98653....23..6999*9986549****6345654222355699****9998866555899****************9***9 PP

          NAM  94 sk.......kgelvglkktLvfykgrapkgektdWvmheyr 127
                  +        +++ +g+k+ L +++  + + ++t+W+++ey+
  Ro05_G24561 130 DDqdgattqGRKSIGIKRKLRYHN--QGSDHHTQWCLDEYT 168
                  9877777766667**********4..444459********7 PP
2NAM42.71.7e-132073354127
          NAM   4 Gfr..FhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvka...eekewyfFskrdkkya...tgkrknratksgyWkatgkdkev 92 
                  G++  F+Ptd++lv ++L  + +++      +i ++d++   ePw++  k+++   +   +yfF+++ kk     +g +  r++ sg+W+++  +k v
  Ro05_G24561 207 GMKiwFSPTDSQLVRYFLVSNFASDF-----IIYDCDLFGQdEPWEIWDKYSGlfsDPPVLYFFISSLKKMGykgRGCNFDRTVGSGTWNQKEASKVV 299
                  55444*************98877654.....6899*9886549****74443334244477***99999877444566889999************** PP

          NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                  +++   +++ +g k+ L +   ++ + ++ +W ++ey+
  Ro05_G24561 300 YDNddqERNPIGRKRKLRYV--NQGSIHHGEWYLEEYT 335
                  *986655566*********9..45555689*******7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    
MSVVASSNSS GFVMSEPSMS MVASSDSSGF VMPLGMKMSF SPTDSQLVRY FLCNSAPNFI  60
ITDCDLFGQE EPWEIWDKYL GFFNKYNPDE LYFFMSSLKK LSPKATGCRI NRTIGGGTWA  120
QKETLKLVYD DQDGATTQGR KSIGIKRKLR YHNQGSDHHT QWCLDEYTSL EVANSCAIFR  180
LRKFKRQHKS PAGICVQGFI QPTLPLGMKI WFSPTDSQLV RYFLVSNFAS DFIIYDCDLF  240
GQDEPWEIWD KYSGLFSDPP VLYFFISSLK KMGYKGRGCN FDRTVGSGTW NQKEASKVVY  300
DNDDQERNPI GRKRKLRYVN QGSIHHGEWY LEEYTSLVDE CAILLLRKNE RCKSSSFEST  360
SVKRKRRQID QLEEKPRKKK ANSKASRQLV TLQDSDSLDG HQRHTVTSHT VPDHHQPIPI  420
QHEDIDNYID NTFPFFKDVD IGTWDFPSLD DFVMASPPLH TDCDQQALAA LDFPSLDALA  480
SPPPPPPPPL VDCDQQALAL ANADDNLQLI NDGIATWDYP FVEDCSMTSL HPQVECDQQA  540
LSTLVDTDDD LHFINEDIEA WGFASVDDCL MASPPPFVDF DEHALALPGQ QSTLSTYTWK  600
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363380KRKRRQIDQLEEKPRKKK
2363384KRKRRQIDQLEEKPRKKKANSK
3364381KRKRRQIDQLEEKPRKKK
4365382KRKRRQIDQLEEKPRKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-09NAC family protein