PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G24450

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 500aa MW: 56501.9 Da PI: 4.2089

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G24450	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60	7.7e-19	17	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pG rF P ++elv yLk+ ++g+k++ + ++d+y ePw++ +++k+ +k++yfF++++k t++r +r++ sg+W+a + k Ro05_G24450 17 LPGERFCPMEDELVLLYLKPMLNGQKVPGRGRvVFDCDLYGRqEPWEIWETYKTrrpndlrLNKDLYFFTQHKKMGLTDSRIRRTVGSGTWRADDSGK 114 589**********************88765449999996549**753333334333334588**********************999988 PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v s +g +vglkk + ++ + ++ W+m e++l Ro05_G24450 115 IVNSVeTGLVVGLKKRYSYK--NEASVHHGCWIMYEFEL 151 7777657778**9998..45555799*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MQHQQYNEME ESRVNQLPGE RFCPMEDELV LLYLKPMLNG QKVPGRGRVV FDCDLYGRQE 60 PWEIWETYKT RRPNDLRLNK DLYFFTQHKK MGLTDSRIRR TVGSGTWRAD DSGKIVNSVE 120 TGLVVGLKKR YSYKNEASVH HGCWIMYEFE LLDRSKKQKK NNDYVLCLLR KNGEPQSGKK 180 RKQLPKKEIL GDNYVCDDGE NLNTEQEELL EPQVKRQRTV QPIDNAPVVP IPSENENDAF 240 AAELEESLPC FEDDNVPSEA EAIGFQGEEN GGLQQLAAEV QSGDEENWGP SFGDDHGILN 300 PLPENENDVF AAELEGLLPC FEDDNVPSEA ELNGFQGEEN GGLQQLAAAM QSGLEENWPG 360 LSFGDDIGIL NPLPEEDFLW EEMVEEMGIV QMEELVLNGY QQYPSPYKCS NKDVAEENVI 420 NNTLLHTPTS SIAANYTVGD DAGWNFAIQS GLRASNSLLM IYWSAAQSYP YLDALTGQPL 480 LFRVRISSSS ILFHVVVDNP

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MQHQQYNEME ESRVNQLPGE RFCPMEDELV LLYLKPMLNG QKVPGRGRVV FDCDLYGRQE  60
PWEIWETYKT RRPNDLRLNK DLYFFTQHKK MGLTDSRIRR TVGSGTWRAD DSGKIVNSVE  120
TGLVVGLKKR YSYKNEASVH HGCWIMYEFE LLDRSKKQKK NNDYVLCLLR KNGEPQSGKK  180
RKQLPKKEIL GDNYVCDDGE NLNTEQEELL EPQVKRQRTV QPIDNAPVVP IPSENENDAF  240
AAELEESLPC FEDDNVPSEA EAIGFQGEEN GGLQQLAAEV QSGDEENWGP SFGDDHGILN  300
PLPENENDVF AAELEGLLPC FEDDNVPSEA ELNGFQGEEN GGLQQLAAAM QSGLEENWPG  360
LSFGDDIGIL NPLPEEDFLW EEMVEEMGIV QMEELVLNGY QQYPSPYKCS NKDVAEENVI  420
NNTLLHTPTS SIAANYTVGD DAGWNFAIQS GLRASNSLLM IYWSAAQSYP YLDALTGQPL  480
LFRVRISSSS ILFHVVVDNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	2e-15	NAC family protein