PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G22566
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 359aa    MW: 40457.7 Da    PI: 4.9231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G22566genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.8e-29135195259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg+nWrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+H+++
  Ro05_G22566 135 EDGHNWRKYGQKDILGAKHPRSYYRCTFRntqSCWATKQVQRSDEDPTIFEITYKGKHTCS 195
                  8**************************998889**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MDTASKSWEQ KSLVGEIIEG MELAQQLRLS LSTTSSSSEN TEFLVQRILT SYEKALLLLQ  60
LSVSPQTSNV DAIANVPPES RMSANTSPCG DDYNHRSFKD QQELQDISKK RKIMAKWTDH  120
VIRVSSENGI EGPHEDGHNW RKYGQKDILG AKHPRSYYRC TFRNTQSCWA TKQVQRSDED  180
PTIFEITYKG KHTCSHGSNS VPPPPSPEQH EQKRHKHENM SQPQQSQGNQ MSFPTNLRVD  240
TENLEGREKM ASPFSFTSTS FGCMMSGDDF LSSMFDNDNF FSNISPSLLS PAAGESNYYL  300
EPPSQMRNIA LNEQISESDL TEIISANNSS TNSPIPDMDF TLDLVEINPN FPFDTPGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-61WRKY family protein