PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G22557
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 313aa    MW: 34915.4 Da    PI: 8.8152
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G22557genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19110160256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Ro05_G22557 110 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 160
                  59******9.**********954...5**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MEAMQENKLP PFEFTDFDIR SSLSNLILTG GTNTLDSIFS HFPQTHTTTT PVSEPLGSSV  60
YLRQRDLLQK FSEQTRANAA VSHLPQRTHP VLIQSSGCSS TYLAPTKKKL YRGVRQRHWG  120
KWVAEIRLPQ NRMRVWLGTY DTAEAAAYAY DRAAYKLRGE YARLNFPNLK DPSKLGFADS  180
SRFNAVKTSV DAKIQAICLK VKREKAKKNA KKSGSVKSEK MTKVDSSSSS SSHLTYYDGL  240
GQELLSSTTP TPTGSEDGVW RCENSSTPSV SNDGPMSMAV AEMEMMEELE FEGCSLARMP  300
SFDPELIWEV LAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.14e-54ERF family protein