PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G22454

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 27998 Da PI: 9.733

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G22454	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.5	1.1e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELS+LC+aeva+i+fss+g+lyeys+ Ro05_G22454 9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCEAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP
2	K-box	105.9	4.9e-35	81	174	8	100
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +e +a+++qqe+akL+ +i++Lq+++Rhl+G++L++L++keL+qLe++Le++l++iRskK+e+ll++ie+lqk+e el++en r+k++e Ro05_G22454 81 TtITEINAQYYQQESAKLRHQIQMLQNSNRHLMGDSLSNLTVKELKQLENRLERGLTRIRSKKHEMLLAEIEYLQKREVELENENVLVRAKIAE 174 3488999************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCE AEVALIVFSS RGRLYEYSNN 60 NSIRNTIERY KKACSDSSGA TTITEINAQY YQQESAKLRH QIQMLQNSNR HLMGDSLSNL 120 TVKELKQLEN RLERGLTRIR SKKHEMLLAE IEYLQKREVE LENENVLVRA KIAELERLQH 180 ADMVSGDQDL ELNAIQALVS RNFFASTMIE GEASYSQPEK KFLNLGAGKG LVKQGKTSSS 240 FGYVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	1e-107	MIKC_MADS family protein