PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G22157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | C3H | ||||||||
Protein Properties | Length: 2040aa MW: 227354 Da PI: 7.3115 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6.1e-12 | 1661 | 1683 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tG Ck+G++CkF+H+ Ro05_G22157 1661 EDCSFYLKTGNCKFGSNCKFNHP 1683 89********************9 PP | |||||||
2 | zf-CCCH | 25.7 | 2e-08 | 1749 | 1774 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++++r G CkyG C+++Hg+ Ro05_G22157 1749 GQTECKYYLRPGGCKYGKACRYNHGK 1774 6789********************96 PP | |||||||
3 | zf-CCCH | 37.6 | 3.6e-12 | 1795 | 1819 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Ro05_G22157 1795 GERECPYYMRNGSCKYGSNCRFNHP 1819 789*********************9 PP | |||||||
4 | zf-CCCH | 24.9 | 3.4e-08 | 1928 | 1954 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+ff+rtG Ck+ ++Ck++H++ Ro05_G22157 1928 PGQPVCSFFLRTGDCKFKSNCKYHHPK 1954 5789*********************96 PP | |||||||
5 | zf-CCCH | 32.8 | 1.1e-10 | 1976 | 1999 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ Ro05_G22157 1976 QNICTHYSRYGICKFGPACKFDHP 1999 679********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 2040 aa Download sequence |
MAASEQPQEV LSWLRTLPVA PEYHPTWAEF QDPIAYIFKI EKEASKYGIC KIVPPVPPAP 60 KKTAIANLNK SLVARGGPSV GEGPKSLPTF TTRQQQIGFC PRKARPVQRP VWQSGEYYTF 120 QQFEAKAKSF EKSYLKRRRK KGGGGLSPLD IETLYWKATV DKPFSVEYAN DMPGSAFVPL 180 SSKKTSASTS REAGDGVTLG ETAWNMRGVS RSRGSLLRFM KEEIPGVTCP MVYVAMMFSW 240 FAWHVEDHDL HSLNYLHMGA GKTWYGVPRE AAVAFEEVVR VQGYGGEINP LVTFATLGEK 300 TTVMSPEVFI SSGIPCCRLV QNAGEFVVTF PRAYHTGFSH GFNCGEAANI ATPEWLRVAN 360 DAAIRRASIN YPPMVSHFQL LYDLALALCS RMPVHNSAEP RSSRLKDKKK GEGETVVKGL 420 FVKNVIQNNE LLHVLGKGSS IVLLPQSSSD ISVCSKLRVG SNPDDLMIDG KQGIKQVKGF 480 YSMKGKLASL CESSRHPSLN GNSNVSAPSK MLNVSTKRES NVEGEGLSDQ RLFSCVTCGI 540 LSFSCVAIIQ PREAAARYLM SADCSFFNDS AVDCEAFQVA NGDPNSSKKG PCTGWFNLEL 600 ASLDETGLME KSTPDGLYDV PVQSADYRIQ MADPINEVES NTEMQGDTSA LGLLALTYGN 660 SSDSEEDQAE LDVPVCGDET NLSDCSLEGR YEYQSASPPL RDSYGGTTGV RSPTLPGSDC 720 GNELPTVDGY VENKHGHQYF DRSVNTETNN LALTKTNGLV GTSLDPVKVS YSGSPDAYDV 780 QTTGFGQATL QKENTSISFA PGCDHDSSRM HVFCLEHAVE VEQQLRSIGG AHILLLCHPD 840 YPRIEDEAKE IAEELGVNYP WNDMVFRHAT REDEERIQSA LDSEEAIAGN GDWAVKMGIN 900 LFYSASLSRS HLYSKQMPYN SVIYNAFGRS SPASSSAGPD VCGRRPAKQK KIVVGKWCGK 960 VWMSHQVHPF LIKREHEEKK VEQEEQRRFH GSAMPDEKLD GKSEGTRKTE KTVVTKQYSR 1020 KRKMNVEGGT TKKAKCFEKE DAVSAYSIDD NSHQQQKRFL KNKQAKYIES GPTKKAKCME 1080 TEDAVSGDSM EDDSHQQNRR MLQSGQAKYV EDDGSDDSMG IDSHQQQSRI AKSKQAKHTA 1140 RDFSMVSDDS VGVDSHHQQR QVAESNAREF SAVSDDSLED NAHQLHRRSL RRNKDKCIGR 1200 ENLTSEGLHG ASSRQQQRRT YKSKQAKIVE REDGALDDTP EDSAVLQNKR ILRGKQIKSE 1260 TLQQKKQENP GRVKQASRRL QETQKQTPKV QNIESEQNTF DINAEKEPEG GPSTRLRKRP 1320 PKEQQETGRK KAKEQPETSR KKAKEQPETG RKKAKEQQQT GRIKVNTTLA VKTKNAPARK 1380 AKNSLAVREE EAEFLCDIEG CTMSFGSKQE LNLHKRNVCP VKGCAKKFFS HKYLVQHRRV 1440 HMDDRPLRCP WKGCKMTFKW AWARTEHIRV HTGARPYVCA EPGCGQTFRA LKCGGRMELS 1500 ESIVSVPPDS HSNSDNNNEI DQVQQQLNYS EIGSQHSIPE TNDIGHQQQN HSVPSDLDHA 1560 VIDQIQKLDL KGDDFEIVVE ENKEKGEDDT EEEGGEFQEV EAEKSYNGRE TENGNESERH 1620 SEEGEQESNE GEDKSENGAE VEKKGEESNR RYQYPVRPEA EDCSFYLKTG NCKFGSNCKF 1680 NHPVRRKNNQ LKDWDFLCLE SFIIDFSFTA VAKAMSMFLI ARVLFLIRIR ECVFKDKVKE 1740 RDELAEKPGQ TECKYYLRPG GCKYGKACRY NHGKGKPSVA SVVELNFLGL PIRQGERECP 1800 YYMRNGSCKY GSNCRFNHPD PTAAGGSDPP SGFDNGGPAS LQGGSQSSSW SAPRSLSESP 1860 LYVPMMMPPS QGVPSQNTEW NSYQAPMYLG ERSMPAPPPY VINNSGTETN VYKQYPMPNQ 1920 VDEFPERPGQ PVCSFFLRTG DCKFKSNCKY HHPKSQTAVS PSFALSDKGL PLRPDQNICT 1980 HYSRYGICKF GPACKFDHPL HLTSSTTSGL DHQLPFSDLA NIKEAGIARS RSGTDDTIQL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1019 | 1024 | SRKRKM |
2 | 1329 | 1342 | RKKAKEQPETSRKK |
3 | 1340 | 1353 | RKKAKEQPETSRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 0.0 | C2H2 family protein |