PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G22077
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 341aa    MW: 38316.9 Da    PI: 5.573
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G22077genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.5e-28958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  Ro05_G22077  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                 79********************************************9997 PP
2K-box18.48.7e-081201821678
        K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                  +lqqe+  L++++++ ++++R +  + L+  s+ eL++ e+ L + l+ + ++K+ ll ++++
  Ro05_G22077 120 ELQQEIGGLQQQLQMAEEQIRIYEPDPLKITSMAELESSEKSLVDTLSCVMQRKEYLLSNHLS 182
                  69********************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRSGLLPKSL AKRIEDVFTR YINLPDQERE HDLQNKEYLL RTLQQLRSEN DIALQLAKFE  120
LQQEIGGLQQ QLQMAEEQIR IYEPDPLKIT SMAELESSEK SLVDTLSCVM QRKEYLLSNH  180
LSSFDSSGIQ QVLPGSFENE VAGWLANGGH NHTQMYDTSA PLDHQLRNLS STLYDPFSQG  240
TSSNGGGDPS SMGECHVSVT NGSDGELPPW PQPYTSSGHH STLMQPSLMP QYQQAMVSSN  300
MPEIIPNEQV EIPVSSSNVQ AYNEGADNYH ENNKVPQLNG H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-100MIKC_MADS family protein