PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G21778
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26616.8 Da    PI: 10.4044
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G21778genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF854.4e-271059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s
  Ro05_G21778 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59
                 8***********************************************86 PP

2K-box86.45.8e-2981170998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  + +++ + +q+e+a L+++++nLq+ +R+++Ge+L+ Ls+k+Lq+Le+qLe+sl+++R kK++ll+++i++l +k + +++en +L kk+
  Ro05_G21778  81 NPASEVKLWQREAAMLRQQLHNLQERHRQMMGEELSGLSVKDLQNLENQLETSLRSVRMKKDQLLMDEIQDLNRKGNLIHQENVELYKKV 170
                  67788999*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFAST  60
SIKSVIERYS KAKEEHNQLG NPASEVKLWQ REAAMLRQQL HNLQERHRQM MGEELSGLSV  120
KDLQNLENQL ETSLRSVRMK KDQLLMDEIQ DLNRKGNLIH QENVELYKKV NLIRQENMEL  180
YKKTTTTLEK KVHHIRKMLL EFIKNKAGGY KFTFYHRNMI EEPQNLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-100MIKC_MADS family protein