PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G21778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26616.8 Da PI: 10.4044 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85 | 4.4e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgkly+++s Ro05_G21778 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 86.4 | 5.8e-29 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e+a L+++++nLq+ +R+++Ge+L+ Ls+k+Lq+Le+qLe+sl+++R kK++ll+++i++l +k + +++en +L kk+ Ro05_G21778 81 NPASEVKLWQREAAMLRQQLHNLQERHRQMMGEELSGLSVKDLQNLENQLETSLRSVRMKKDQLLMDEIQDLNRKGNLIHQENVELYKKV 170 67788999*******************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYDFAST 60 SIKSVIERYS KAKEEHNQLG NPASEVKLWQ REAAMLRQQL HNLQERHRQM MGEELSGLSV 120 KDLQNLENQL ETSLRSVRMK KDQLLMDEIQ DLNRKGNLIH QENVELYKKV NLIRQENMEL 180 YKKTTTTLEK KVHHIRKMLL EFIKNKAGGY KFTFYHRNMI EEPQNLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-100 | MIKC_MADS family protein |