PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G20012

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

BES1

Protein Properties

Length: 657aa MW: 73993.3 Da PI: 6.0478

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G20012	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	138.8	5.4e-43	61	192	2	134
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslk 99 ++gr++++kE+E++k+RER RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGwvve+DGttyr+ +p+ ++g s+s s + ++ Ro05_G20012 61 TKGRREREKEKERTKLRERLRRSITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEPDGTTYRQ--SPP----QIGGAYSMSLRSVET--PV 150 789****************************************************************4..455....334444444444322..34 PP DUF822 100 ssalaspvesysaspksssfpspssldsislasa.......a 134 s ++ + s++ + ++++sp+slds+ +a+ + Ro05_G20012 151 SGVKQPLECHPSSVVRIDESLSPASLDSVVIAERdgknekfS 192 45555555567788899999*****999998765544441 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MNDESLRQDL DPQSDQSSDY LPPQPHHSHP LHSQPQPQPR RPRGFAATAA AGSVGPISPS 60 TKGRREREKE KERTKLRERL RRSITSRMLA GLRQYGNFPL PARADMNDVL AALAREAGWV 120 VEPDGTTYRQ SPPQIGGAYS MSLRSVETPV SGVKQPLECH PSSVVRIDES LSPASLDSVV 180 IAERDGKNEK FSSGSPPMNS VDCLESDQLM QHIPSATGFT PSPYVPLYVT LATGFINNYC 240 QLVDPEGLRQ ELAHMQSLNA DGVVVDCWWG IVEGWSPQKY VWSGYRGLFN IVREFKLKLQ 300 VVMAFHEYGR RESGDALIPL PQWVLEIGKE NQDIFFTDRE GRRNTECLSW GIDKERVLNG 360 RTGVEVYFDF MRSFRTEFDD LFAEGLISAV EIGLGASGEL KYPSFSERMG WIYPGIGEFQ 420 CYDRYLQQSL QKAAKLRGHS FWARGPDNAG GYNSQPHETG FFCERGDYDS YYGRFFLHWY 480 AKTLIDHADN VLSLATLAFG ETKIIVKVPA VYWWYKTPSH AAELTSGYYN PKNQDGYSPV 540 FEVLAKHSVT VKFVCSGPHD SDEALADPEG LSWQVLNLAW NRGLTVAGEN ALSCYDREGC 600 LRIVEMVKPR NDPDCHHFTF FVYQQPSPLV QGTICFPELD FFIKCMHGDT ARNLVSC

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MNDESLRQDL DPQSDQSSDY LPPQPHHSHP LHSQPQPQPR RPRGFAATAA AGSVGPISPS  60
TKGRREREKE KERTKLRERL RRSITSRMLA GLRQYGNFPL PARADMNDVL AALAREAGWV  120
VEPDGTTYRQ SPPQIGGAYS MSLRSVETPV SGVKQPLECH PSSVVRIDES LSPASLDSVV  180
IAERDGKNEK FSSGSPPMNS VDCLESDQLM QHIPSATGFT PSPYVPLYVT LATGFINNYC  240
QLVDPEGLRQ ELAHMQSLNA DGVVVDCWWG IVEGWSPQKY VWSGYRGLFN IVREFKLKLQ  300
VVMAFHEYGR RESGDALIPL PQWVLEIGKE NQDIFFTDRE GRRNTECLSW GIDKERVLNG  360
RTGVEVYFDF MRSFRTEFDD LFAEGLISAV EIGLGASGEL KYPSFSERMG WIYPGIGEFQ  420
CYDRYLQQSL QKAAKLRGHS FWARGPDNAG GYNSQPHETG FFCERGDYDS YYGRFFLHWY  480
AKTLIDHADN VLSLATLAFG ETKIIVKVPA VYWWYKTPSH AAELTSGYYN PKNQDGYSPV  540
FEVLAKHSVT VKFVCSGPHD SDEALADPEG LSWQVLNLAW NRGLTVAGEN ALSCYDREGC  600
LRIVEMVKPR NDPDCHHFTF FVYQQPSPLV QGTICFPELD FFIKCMHGDT ARNLVSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	BES1 family protein