PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G19984
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 348aa    MW: 40122.5 Da    PI: 4.4981
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G19984genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.56.3e-2461412128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diy.kvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                  p+G+rFhPtd+elv++yL+++++  +   +++++++ d y ++ePw   +        kv ++e+ ++fF++r+k ++t kr  r++ sg+W+ + + 
  Ro05_G19984   6 PVGVRFHPTDHELVDYYLQNRAAMGDQFRSDFVSDCpDFYgEMEPWVVWQmygggesnKV-EDEEPLFFFTHRRKLNPTAKRFDRKVGSGTWSGQYSR 102
                  89******************98887755559999999988468***99643566653222.244467**************************99875 PP

          NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  + v +  ++ ++g+k+ + +  g  ++ ++  W+m+ey++
  Ro05_G19984 103 EIVAEDdDSVVIGIKREFRYEGG-LNSRQNGAWLMQEYQI 141
                  55555467778********9855.555589********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MELGYPVGVR FHPTDHELVD YYLQNRAAMG DQFRSDFVSD CPDFYGEMEP WVVWQMYGGG  60
ESNKVEDEEP LFFFTHRRKL NPTAKRFDRK VGSGTWSGQY SREIVAEDDD SVVIGIKREF  120
RYEGGLNSRQ NGAWLMQEYQ ITNDNDSTLV LCTLRKNPRK APPPTPTDQK RSVIKMTRVN  180
DNKRKGIVDQ LRKPKAKKQK REYTCDQEQE GSSVDQPKME VLTYQFHGHD QDCYYPELYP  240
ELNVDKHDFF MVDELLAPTP SDQSYEGNNL ELVSDEQIYD DQPAQVVQFQ EESNKCLALL  300
LNGFNANDPI DTEHQCQYSD SSVQAFFDSN FSLPLPATQV LSSPGLEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184199RKGIVDQLRKPKAKKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-18NAC family protein