PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G19154
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 281aa    MW: 32458.6 Da    PI: 4.4783
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G19154genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67.2e-3063121259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+ +Hnh+
  Ro05_G19154  63 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKSDASVLIITYTCSHNHP 121
                  699***********************9988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MEEKQEMDET LSSPEQDSEA SKELMSRPET QASKRRKVAH QKTIVTVKIG PNVGKLKNEG  60
PPSDFWSWRK YGQKPIKGSP YPRGYYRCST SKGCSAKKQV ERSKSDASVL IITYTCSHNH  120
PGPDVSSTTK SVSQPVPPKE EPNSEDDDHD LPAQVPKEEE QEQDQDEEQE QEQEQERKLD  180
EEQEQDHFHY IQSPIRFSQD IVIYQEDPFS TVNHLEKTLL DEHPHPLCYS QLMSFSTTPK  240
SEEEEEDFYD ELEELLPTSS YFPSFMRSNL SQLERIPFVP S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.23e-37WRKY family protein