PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G18407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26688.3 Da PI: 5.6557 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.8e-18 | 60 | 108 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Ro05_G18407 60 YRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALTIKG 108 9****998.**********843...6**********************98876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MEEEQSTTTT SSSSGSTPSA ECVAGKICKR SNWRVVENGS EKRAKSDGSE DQGSKQHPMY 60 RGVRMRQWGK WVSEIREPRK KSRIWLGTFA TPEMAARAHD VAALTIKGGS AFLNFPELAQ 120 ELPRPASSSP KDIQAAAAKA AALSYPSCSS HEAHEVEAEP ARDSSTSPDD HNDDTFYDLP 180 DLLLDVGQYH SDHEYYFSVA TWQLAGVEPY NASSKQEVKK VKRERNSNSG LEEAEIAKTE 240 GY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 3e-52 | ERF family protein |