PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G17846
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 329aa    MW: 36623.5 Da    PI: 4.8551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G17846genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19113163155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrd +     r  r +lg+++taeeAa  +++a+ +l+g
  Ro05_G17846 113 KKFRGVRQRP-WGKWAAEIRDpF-----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 163
                  59********.**********66.....45*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MNPAIKYTQH RNHTKLVSNF QPSEAEPVRP RIVRISVTDG DATDSSGDDE PEPFFGRQRV  60
KKYVNEISIE SCSREADEAA VWKSRTTRTV RKKTAGKSVV PATPRTLKAA PGKKFRGVRQ  120
RPWGKWAAEI RDPFRRVRLW LGTYDTAEEA AMVYDNAAIQ LRGPHALTNF HSPPAVKSEA  180
DIMSDVKPVV SYGYNSGEES HNTICSPTSV LRCPSPSNED GESSPSPKQQ VQVQGSIEVR  240
DESCVSENFS ELSDHTSFES FIPDDIFDFQ TTIPDFFEET SVFKENFCNF GDLFADSAMD  300
FGFGSSSTTS CDYFQDIGDL FASDPLVAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.11e-58ERF family protein