PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G16799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 34814.2 Da PI: 4.895 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.1e-30 | 133 | 190 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh Ro05_G16799 133 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSCSNPELFIITYTAEHNH 190 79*************************998**************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence |
MENWDLQAVV RGCNNNFEAL TNTMEYSQPC NFGFAPLTIE DDDIFHAFPL LFEATTAFDE 60 LEELYKPFYP LLQPISPPTI PTPSVSVPQE VAEKEEEPKK LKSMKESSPM CKRSRKNQSK 120 RVVKEVKEED LFSDVWAWRK YGQKPIKGSP YPRSYYRCSS SKGCSARKQV ERSCSNPELF 180 IITYTAEHNH VHPTRRNSLA GSTRTKFPKS QKKEKRTKEV VPVKEEAQRL QEEDEVSQES 240 VMDMMLGDEV VPGLEDLDQK LEELGEFMAS EPVLADGFFS DPFSDSYFPS SWFTVHSSST 300 VTGAC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 7e-42 | WRKY family protein |