PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G16303

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 373aa MW: 41830.7 Da PI: 8.005

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G16303	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.4	7.9e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL +kv++ +++ ++++ vd++k+ePwdLp k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke+l+ +g Ro05_G16303 5 LPPGFRFHPTDEELITYYLGRKVSDVSFTS-QAVAVVDLNKCEPWDLPGKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEILR-QGV 100 79***********************999.88***********988999************************************9.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrap+gekt+Wvmheyrle Ro05_G16303 101 LVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 131 *****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MPKNLPPGFR FHPTDEELIT YYLGRKVSDV SFTSQAVAVV DLNKCEPWDL PGKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEILRQGV LVGMKKTLVF YKGRAPRGEK 120 TNWVMHEYRL ENKRHPFKSS TSKEEWVVCR VFQKSIALKK PQQITSSSPQ SVDSQCDTNS 180 IANEFGDVEL PNFMNNIANS SSGFISNNMS IPQSNNCNII DNNINNDVNM ISTTLNMNNW 240 LGAREAAASG AILPAAGLAS WPSSLLSPSN LSSVNSLLLR ALQLRSSGAS TNSTIYQQPI 300 RDATAGLEDH YSSFIATQQQ QQQQGLMSHH FQTDHNMNQS NLHASSSSKD QIMDSEPQSQ 360 QHPEQPFNLD SIW

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MPKNLPPGFR FHPTDEELIT YYLGRKVSDV SFTSQAVAVV DLNKCEPWDL PGKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEILRQGV LVGMKKTLVF YKGRAPRGEK  120
TNWVMHEYRL ENKRHPFKSS TSKEEWVVCR VFQKSIALKK PQQITSSSPQ SVDSQCDTNS  180
IANEFGDVEL PNFMNNIANS SSGFISNNMS IPQSNNCNII DNNINNDVNM ISTTLNMNNW  240
LGAREAAASG AILPAAGLAS WPSSLLSPSN LSSVNSLLLR ALQLRSSGAS TNSTIYQQPI  300
RDATAGLEDH YSSFIATQQQ QQQQGLMSHH FQTDHNMNQS NLHASSSSKD QIMDSEPQSQ  360
QHPEQPFNLD SIW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-102	NAC family protein