PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G16297

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CO-like

Protein Properties

Length: 446aa MW: 50241.4 Da PI: 4.8737

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G16297	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.2	7e-08	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k++++fC ++ +lC+ C + H+ H++v Ro05_G16297 16 ARACDSCLVKRARWFCGADDAFLCKRCDASVHSAnllasrHERV 59 678*****************************668888888876 PP
2	CCT	68.1	2.4e-23	394	437	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Ro05_G16297 394 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 437 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MITEKKAANA MGGNTARACD SCLVKRARWF CGADDAFLCK RCDASVHSAN LLASRHERVR 60 LNTSSYKLND HLAAEAAHEP PLPAWQQGVT RKARTPRGHG NHKSGKDEAG KVLEQPMPFV 120 PEMGSEEVDY SCLEDDHESE DLEQMLYRVP IFDPFEAELC NKMTNTDHHE VRMGNVHEDY 180 GARTSSPCDE LDNLQGLILP SDMELAEFAA DVETMLGKGL DEDCSDIKGL GLLDGTKEEE 240 QYGMDVCDIG IEERKLVKVE EEDQGMECEF NPSMLDWNLD YDDESAAVLM GGGTSTDQEE 300 EEEEEKVVVL LEAEKKRKKI CLRLNYEAVI TAWPSQRCPW TTGVKPELNP NDGWPDCMGM 360 WGADQIHNLQ GHGDSSAAGF VMGMRGNNEQ RPGREARVSR YREKRRTRLF SKKIRYEVRK 420 LNAEKRPRMK GRFVKRTSLQ LGMGTS

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MITEKKAANA MGGNTARACD SCLVKRARWF CGADDAFLCK RCDASVHSAN LLASRHERVR  60
LNTSSYKLND HLAAEAAHEP PLPAWQQGVT RKARTPRGHG NHKSGKDEAG KVLEQPMPFV  120
PEMGSEEVDY SCLEDDHESE DLEQMLYRVP IFDPFEAELC NKMTNTDHHE VRMGNVHEDY  180
GARTSSPCDE LDNLQGLILP SDMELAEFAA DVETMLGKGL DEDCSDIKGL GLLDGTKEEE  240
QYGMDVCDIG IEERKLVKVE EEDQGMECEF NPSMLDWNLD YDDESAAVLM GGGTSTDQEE  300
EEEEEKVVVL LEAEKKRKKI CLRLNYEAVI TAWPSQRCPW TTGVKPELNP NDGWPDCMGM  360
WGADQIHNLQ GHGDSSAAGF VMGMRGNNEQ RPGREARVSR YREKRRTRLF SKKIRYEVRK  420
LNAEKRPRMK GRFVKRTSLQ LGMGTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	315	319	KKRKK
2	405	421	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	7e-79	CO-like family protein