PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G16292
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 370aa    MW: 41909.7 Da    PI: 6.1968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G16292genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.5e-12112151346
          AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                  y+GVr++k +g+++AeIrd +     r  r +lg+f taeeA  a+
  Ro05_G16292 112 YTGVRRRK-WGKYAAEIRDpF-----RgIREWLGTFNTAEEASVAY 151
                  99***998.**********66.....56999***********9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MPGLRSQVLN QDRNCNKLKA KQRRKEEDTS SLKRVRIMYT DPYATDSSSE DDVNEHQSVP  60
RKKVLVSKIV VGGTQDESSA ERLSHCKTNG GKIGNSMKSD DSKKNHRSSS MYTGVRRRKW  120
GKYAAEIRDP FRGIREWLGT FNTAEEASVA YQKRKLEFDT IKLRRKTQMD YDDLQLSNKA  180
FKSSHLSEKT QKSDHDYECR SFHLSGESQD SSVAADAANE TFSYEETATV FRHPSPSSVL  240
DMPPSRAALG IRFSNGEVVL QVGSVQLLSE EELPNLKFPE APILSPIGAE DWEFMGFVDT  300
DMIDGLDQFF VGSSDIVDPP ARYDGNGFSW LQDQIAQRVY LFSLCFFGPI ASNDFRIYMA  360
TFTYDKESQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.16e-24ERF family protein