PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G15988
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 352aa    MW: 40586.7 Da    PI: 4.894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G15988genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.82.1e-1981492128
          NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikev.diy.kvePwdLpk.............kvkaeekewyfFskrdkkya..tgkrknratksg 81 
                  p+G+rFhP d elv +yL+++ v g +++  ++++e+ + y + ePw +               kv+++e+ +yfF++r+k +   t kr  r++ sg
  Ro05_G15988   8 PVGVRFHPLDYELVGYYLHNRaVMGGQFRP-DFVSECpHFYgEKEPWLIWDlysggggasssncKVDQDEEPLYFFTHRKKLNLnpTAKRFDRKVGSG 104
                  89****************998456666666.89999966652569*988534578999999877777777788*****99876533799********* PP

          NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +W+   + k+v+++ g ++g+ + + +  g +++ ++  W+m+ey++
  Ro05_G15988 105 TWSGESS-KQVYDSAGVVIGINRHFRYEGGFDSR-QNGAWMMQEYQM 149
                  **98765.899999************98665555.89********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MELGYPYPVG VRFHPLDYEL VGYYLHNRAV MGGQFRPDFV SECPHFYGEK EPWLIWDLYS  60
GGGGASSSNC KVDQDEEPLY FFTHRKKLNL NPTAKRFDRK VGSGTWSGES SKQVYDSAGV  120
VIGINRHFRY EGGFDSRQNG AWMMQEYQMV TADKNDAAQD LVLCTLRKNP RKLPPPTTTT  180
TQSQRQSQSK NIVDDKKRKR TCDPDHRPKK PKKAKEQRKE ETCIVDQPNM EETNYEVDQI  240
HEQNMQALLP YQDQDYYPEL DFDEPEVTVD ELFAPSTPDH QSSYDYHYGN NFNSSMSNEH  300
DLPQPQLVQD ESNEDLATFA QCLNTDDLID GDHYQFSDSQ VHKVLTHSLV PS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196201KKRKRT
2197212KRKRTCDPDHRPKKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-14NAC family protein