PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G15967
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 354aa    MW: 39956.8 Da    PI: 4.5332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G15967genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.8e-12188231654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Ro05_G15967 188 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 231
                  589*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MEVNQHSVLE ELLALRREST WETIPTEMNE FLSSSTWSSF DYFDNQNPST FFPNSSSSQG  60
FSPPFEPNLN NYNHNTTSFN EVFYPLGFGT DEVLSAPQVT TDSSYNTLGD TPPFPVQEDN  120
NPWSMLEEEE LGLVGDEIHN LETQAAACKV EPTQSSSPEA APVFNMGMCV ERNNRASKKL  180
QGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLDRINNLQL  240
EIEEGGSDQL NVMRHFKDMK NEMLVRNSPK FDVQRRNVDT RVEICCAGKP GLLLSTVTTL  300
EALGLEIQQC VISCFSDFAM QASCSEGLDQ RTLVNSEDIK QALFRNAGYG GRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191198ERRRRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-89bHLH family protein