PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G15626

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 369aa MW: 40353.5 Da PI: 6.1868

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G15626	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.5	1.6e-18	18	67	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p g ++r++lg+f+tae+Aa+a++ a++ ++g Ro05_G15626 18 AYRGVRKRK-WGKWVSEIREP---GTKTRIWLGSFDTAEMAAAAYDVAALHFRG 67 69**999.******8...325*********************9998 PP
2	AP2	57.9	2.5e-18	199	248	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv+eIr+p gk++r++lg++ ++e+Aa+a++ a++ l+g Ro05_G15626 199 KYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYESPEMAAAAYDVAALHLRG 248 8***999.******8...557***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGEPNSSSRT VYGAATSAYR GVRKRKWGKW VSEIREPGTK TRIWLGSFDT AEMAAAAYDV 60 AALHFRGREA RLNFPELVNC LPRPASSSSD DIRMAAHEAA LRLGSSGGGT TDSVVAAGHC 120 EVGSSSSSGV APVTVRLSPS QIQAINESPL DSPKMWMQMA EALMLEESMM FSNDFDDKGM 180 NKINQTLKDM EQVHEPAAKY RGVRKRKWGK WVSEIREPGK KTRIWLGSYE SPEMAAAAYD 240 VAALHLRGRA VLLNFPEMVD SLPRPASSSP SDVQLAAQEA ALRFRRLPMG SVSTEAAGGS 300 SGGAVPVTVG LSPSQIQAIN ESPLDSPKMW MPYMYMSHRD EDLFLGEDVS SSMFFYDGDD 360 MQHQSIWDS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGEPNSSSRT VYGAATSAYR GVRKRKWGKW VSEIREPGTK TRIWLGSFDT AEMAAAAYDV  60
AALHFRGREA RLNFPELVNC LPRPASSSSD DIRMAAHEAA LRLGSSGGGT TDSVVAAGHC  120
EVGSSSSSGV APVTVRLSPS QIQAINESPL DSPKMWMQMA EALMLEESMM FSNDFDDKGM  180
NKINQTLKDM EQVHEPAAKY RGVRKRKWGK WVSEIREPGK KTRIWLGSYE SPEMAAAAYD  240
VAALHLRGRA VLLNFPEMVD SLPRPASSSP SDVQLAAQEA ALRFRRLPMG SVSTEAAGGS  300
SGGAVPVTVG LSPSQIQAIN ESPLDSPKMW MPYMYMSHRD EDLFLGEDVS SSMFFYDGDD  360
MQHQSIWDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71450.1	4e-46	ERF family protein