PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G15602

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 540aa MW: 62493.1 Da PI: 4.5762

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G15602	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.4	1.7e-16	24	160	6	128
NAM 6 rFhPtdeelvveyLkkkvegkk..leleevikevdiykv...ePwdLpkkvka.....eekewyfFskrdkkyat.gkrknratk..sgyWkatgkdk 90 F+Ptd +lv +yL +k+ + + l+++++e+diy + Pwd+ + +++ +++ +yfFs+ +k +++ g+r r++ g+W++t k Ro05_G15602 24 TFQPTDAQLVGCYLYNKIFMAPtpIGLKSTFPEIDIYGStglPPWDIWR-IYEpfkfpHQDFIYFFSPVKKLNPNgGSRFARTIGsdGGTWSETEAAK 120 5**************9999855556667999999975444863.2222333344567*****9986789999755448****** PP NAM 91 evlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +v+++ ++ g + + + k+ ++ ++t W+m+e+++ Ro05_G15602 121 PVYVNgIQQPFGKLRKFRYEKNkDKGFEHHTAWLMDEFTI 160 74445588888898886523334579******86 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MAASSSSSIQ FMTLEELDEG VVKTFQPTDA QLVGCYLYNK IFMAPTPIGL KSTFPEIDIY 60 GSTGLPPWDI WRIYEPFKFP HQDFIYFFSP VKKLNPNGGS RFARTIGSDG GTWSETEAAK 120 PVYVNGIQQP FGKLRKFRYE KNKDKGFEHH TAWLMDEFTI NQAPHLALCR LKINDKGGGR 180 NKRKKFSDDK NERKTKSFKN RKIEPKRDQM QYKICEQQKG SASFTSTSTT TQQLSTPSQY 240 EDDQVVQIHR EDPLVQVHHH DNHDMWNDHQ FIASIDQRYD EQQQQFSDYS LERLQESELN 300 ERCEEEEQLQ QQDQQQLLPS YSHHHQQQQL LGDDDLMVFY QPRAPHYDDD EVVQVQEDSY 360 NCHEQQLLLC DDHDYLDDEN LMFSTTALLG KDEMLNDDPN LMAASVAQSL ASGDEEQQQF 420 SDDYSLVPQQ QVEPNKRCEE QQEQRDEQKL LPSPSHFHDL GDDDLMVYGH QDFDIPLDTA 480 YLQSDEFNGF YIDQDQPTAL QWHSSTPTSS SPSRQLLLVT KFTGLAGVLL VILVLARRSL

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MAASSSSSIQ FMTLEELDEG VVKTFQPTDA QLVGCYLYNK IFMAPTPIGL KSTFPEIDIY  60
GSTGLPPWDI WRIYEPFKFP HQDFIYFFSP VKKLNPNGGS RFARTIGSDG GTWSETEAAK  120
PVYVNGIQQP FGKLRKFRYE KNKDKGFEHH TAWLMDEFTI NQAPHLALCR LKINDKGGGR  180
NKRKKFSDDK NERKTKSFKN RKIEPKRDQM QYKICEQQKG SASFTSTSTT TQQLSTPSQY  240
EDDQVVQIHR EDPLVQVHHH DNHDMWNDHQ FIASIDQRYD EQQQQFSDYS LERLQESELN  300
ERCEEEEQLQ QQDQQQLLPS YSHHHQQQQL LGDDDLMVFY QPRAPHYDDD EVVQVQEDSY  360
NCHEQQLLLC DDHDYLDDEN LMFSTTALLG KDEMLNDDPN LMAASVAQSL ASGDEEQQQF  420
SDDYSLVPQQ QVEPNKRCEE QQEQRDEQKL LPSPSHFHDL GDDDLMVYGH QDFDIPLDTA  480
YLQSDEFNGF YIDQDQPTAL QWHSSTPTSS SPSRQLLLVT KFTGLAGVLL VILVLARRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	206	KRKKFSDDKNERKTKSFKNRKIEPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-09	NAC family protein