PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G14876 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25349.8 Da PI: 6.1699 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.1 | 3.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaevaviifs++gklye+ss Ro05_G14876 9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSTRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 60.4 | 7.5e-21 | 87 | 173 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++e+ +++ + k+ie +++++R+llG++Les+s+ eL+q+e+qLe+sl+kiR++K +l+eqie+l+ ek+l e+n +L +k Ro05_G14876 87 DHDHMEHVNEDNGSIAKRIEFIESSKRKLLGDGLESCSIDELHQMENQLEQSLSKIRARK--MLREQIEKLKGEEKSLLEQNAKLMEKC 173 567899999999***********************************************9..69*********************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVAVIIFST RGKLYEFSSC 60 SSLNNTIDRF QKRMKDQEGL GGKAVRDHDH MEHVNEDNGS IAKRIEFIES SKRKLLGDGL 120 ESCSIDELHQ MENQLEQSLS KIRARKMLRE QIEKLKGEEK SLLEQNAKLM EKCGMQLIGP 180 PSNGEDDDDD NDDVECESPT ETMEVETELF IGPPKRRSAK KTP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 1e-69 | MIKC_MADS family protein |