PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G14872

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 291aa MW: 32759.8 Da PI: 6.6793

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G14872	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.7	8.4e-08	240	273	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Ro05_G14872 240 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273 469*****************************87 PP
2	ELK	25.5	3e-09	194	215	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Ro05_G14872 194 ELKIELKQGFKSRIEDVREEIL 215 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MQDSGLGMMG SGGGGGLSGG GGDDHAHQLK AEIATHPLYE QLLSAHVSCL RVATPIDQLP 60 LIDAQLSQSH HLLRSYASHQ QQHGHSLSPH ERQELDNFLA QYLIVLCSFK EQLQQHVRVH 120 AVEAVMACRE IESTLQALTG VSLGEGTGAT MSDDEDDMQM DFSMDQAGSD AHDMMGFGLP 180 TESERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTTV LKNWWQQHSK 240 WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTSLKSKRK R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	291	RKRNWHSNSQSVTSLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-164	TALE family protein