PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G14840
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 667aa    MW: 73858.7 Da    PI: 5.2047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G14840genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS409.43.5e-1252766452374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   +lL +c+ea+  ++ +++++++a+l elasp+g+++ Rl+ay+teALa r++r +++++++ pp+e + +  +e+ +al+l+++vsPi+kf h+t N
  Ro05_G14840 276 LSLLNACVEAIGMKNIAAINHFIAKLGELASPKGSTISRLTAYYTEALALRVTRLWPHVFQISPPREFD-RGDDESGTALRLLNQVSPIPKFLHFTSN 372
                  689****************************************************************98.5678888999****************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  + +l+a+eg++rvHiiDfd++qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fA +l++pfef++ v++rled++l++L+vk
  Ro05_G14840 373 EILLRAFEGKDRVHIIDFDLKQGLQWPSLFQSLASRTNPPSHVRITGVGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVDRLEDVRLWMLHVK 465
                  **************************************************....***************************.7*************** PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++E++aVn+++qlh++l + +  +   +++L l++s++P +v ++eqea+hn++++ +r++++l+yysa+fd + ++lp +s +rikvE   ++rei+
  Ro05_G14840 466 EQETVAVNCAFQLHKTLYDATGGA--LRDFLGLIRSTNPAIVLMAEQEAEHNEPRLEARVSNSLKYYSAIFDLIGSSLPLDSPARIKVEDT-VAREIR 560
                  ****************96554444..589*************************************************************9.9***** PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                  n+vaceg++r erhe +ekWr+ +e+ GF+   +++++  q + ll++++ + y+v+++       + l+l W d+pL++vSaW+
  Ro05_G14840 561 NIVACEGSDRLERHEGFEKWRKLMEQGGFRCTGITDRELLQSQFLLKMYECENYSVKKQghenegAAGLTLSWTDQPLYTVSAWT 645
                  **************************************************999****6655555577889**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE TAAQLQACHF QLPSMSTQRL DLPCSFPRKD SSRSQPIRPV  60
GLSVEKSSID SKTGTCSLKQ SIRLPPLATS RPAANIQAEV KDQFWEKRGK GLKRFAEVED  120
DDDHEDDDES CRNRAKRKRC SSENGEGDEL SLGELGGGNF WFQPGFHVPR SVQAITGIDP  180
PQFPYSFPNN PWLHSVVTEI TDLKGGETSH GPLGEPSGDS STSSESQSLD LRVNESVSEP  240
EAGNGSGNPY NPHGDIGVEA EDEEDCEVEH QGFELLSLLN ACVEAIGMKN IAAINHFIAK  300
LGELASPKGS TISRLTAYYT EALALRVTRL WPHVFQISPP REFDRGDDES GTALRLLNQV  360
SPIPKFLHFT SNEILLRAFE GKDRVHIIDF DLKQGLQWPS LFQSLASRTN PPSHVRITGV  420
GESKQELNET GDRLAGFAGA LNLPFEFHPV VDRLEDVRLW MLHVKEQETV AVNCAFQLHK  480
TLYDATGGAL RDFLGLIRST NPAIVLMAEQ EAEHNEPRLE ARVSNSLKYY SAIFDLIGSS  540
LPLDSPARIK VEDTVAREIR NIVACEGSDR LERHEGFEKW RKLMEQGGFR CTGITDRELL  600
QSQFLLKMYE CENYSVKKQG HENEGAAGLT LSWTDQPLYT VSAWTPIDVA GGSSSSFSQP  660
KLAFLQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein