PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G14457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21453.2 Da PI: 8.1249 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.1 | 4.2e-45 | 13 | 111 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el++++ Ro05_G14457 13 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDTAN 110 7*********************************************************************************************9987 PP DUF260 99 e 99 + Ro05_G14457 111 A 111 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence |
MASSSSSSSY NSPCAACKFL RRKCMPGCIF APYFPPEEPQ KFANVHKIFG ASNVTKLLND 60 LLPHQREDAV NSLAYEAEAR VRDPVYGCVG AISFLQRQVQ RLQKELDTAN ADLIRYACNE 120 IITTPGVNSV IQPQMAPRRR PMDNHQFYQQ GSAAIPPAAN FQVPYNLPWN VDIHNRTSGD 180 HINEGGGGGG GEGRM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 4e-75 | LBD family protein |