PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G13874

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 757aa MW: 86079.1 Da PI: 6.1905

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G13874	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.3	2e-31	79	166	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s ++s+r+g+i++r+ vCs+eg+r++ ++ +++r+r+ tr+gCka+++vkk+++g+w v+kl++eHnHel+p Ro05_G13874 79 FYNSYARRVGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRDGGEN--RSKRQRTITRVGCKAQMTVKKQSSGRWAVSKLVKEHNHELVP 166 9***************************************9988..999***********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence
MEYKPLNDVV EFDLGGSGED DTIALDLEHP DDGYDIFEDD LVQVASSSTG FGDDLGNGDP 60 NLEPYEGMEF DSEQASRIFY NSYARRVGFS TRVSVYQRSR RDGSIICRQI VCSREGFRRD 120 GGENRSKRQR TITRVGCKAQ MTVKKQSSGR WAVSKLVKEH NHELVPPDKV HCLRSHRHVS 180 GPARSLIDTL QAAGMGPSGV MSVLIKESGG INNVGFTKVD CQNYMSSSRQ RTLGSGGQLV 240 FDYLKRMQDE DPGFFCAVQG DFENSTGNIF WADSNSRMNY NYFGDAVTFD TTYRTNRYRV 300 PFAPFTGWNH HGQPVLLGCA LLLNESESSF VWLFQTWLAA MSSCHPVSIT TDQDRIIRAA 360 VMQVFPGTRH RFCKWNVFRE AQEKLSHIYH SQPTFEAEFL RCINVTETIE EFELCWESLL 420 KRYDLDNNEW LQSMYYARQQ WVPVFLRDTF FGEMFATQGS DNMNSYFDGY INASTNIQVL 480 IKQYEKAITT RHEKEVKADY DTMNISPILR TPSPMEKQAA KLYTRIIFMK FQEELVETLA 540 YPATVVDDTG SETLFRVAKF GEDHKGHFVK FNVFEKKASC SCQMFEFSGI ICRHILAVFK 600 VTNVLTLPSH FILKRWTRNA KSGVLLDEHA LGLPNDSQDS SAARYDNLQR EVIKYVEEGA 660 ESESVYNAAM DALREAANKV AAAKKHGPGV VHNTPMNCSQ QLLSCTMDQD KKIEELTSEL 720 EIASQRCEAY QAKLLAVLKD MEEQKLKISV NVRNVVL

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence

MEYKPLNDVV EFDLGGSGED DTIALDLEHP DDGYDIFEDD LVQVASSSTG FGDDLGNGDP  60
NLEPYEGMEF DSEQASRIFY NSYARRVGFS TRVSVYQRSR RDGSIICRQI VCSREGFRRD  120
GGENRSKRQR TITRVGCKAQ MTVKKQSSGR WAVSKLVKEH NHELVPPDKV HCLRSHRHVS  180
GPARSLIDTL QAAGMGPSGV MSVLIKESGG INNVGFTKVD CQNYMSSSRQ RTLGSGGQLV  240
FDYLKRMQDE DPGFFCAVQG DFENSTGNIF WADSNSRMNY NYFGDAVTFD TTYRTNRYRV  300
PFAPFTGWNH HGQPVLLGCA LLLNESESSF VWLFQTWLAA MSSCHPVSIT TDQDRIIRAA  360
VMQVFPGTRH RFCKWNVFRE AQEKLSHIYH SQPTFEAEFL RCINVTETIE EFELCWESLL  420
KRYDLDNNEW LQSMYYARQQ WVPVFLRDTF FGEMFATQGS DNMNSYFDGY INASTNIQVL  480
IKQYEKAITT RHEKEVKADY DTMNISPILR TPSPMEKQAA KLYTRIIFMK FQEELVETLA  540
YPATVVDDTG SETLFRVAKF GEDHKGHFVK FNVFEKKASC SCQMFEFSGI ICRHILAVFK  600
VTNVLTLPSH FILKRWTRNA KSGVLLDEHA LGLPNDSQDS SAARYDNLQR EVIKYVEEGA  660
ESESVYNAAM DALREAANKV AAAKKHGPGV VHNTPMNCSQ QLLSCTMDQD KKIEELTSEL  720
EIASQRCEAY QAKLLAVLKD MEEQKLKISV NVRNVVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein