PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G13870

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 338aa MW: 37345 Da PI: 4.5375

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G13870	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.5	6.8e-09	151	193	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k+ rr +N+ AA rsR+R+k+++ Le k+k Le+e ++L Ro05_G13870 151 SKKRRRQLRNKDAAMRSRERRKMYVTDLEMKSKYLEGECRRLG 193 6999**********************************98664 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MEFDGGLEFL DNCNDVIGEI DWDFVFQDAN GLNVLDELEN PAVTATGASP SSSSSSTVED 60 APSNPSPGSI DSWIGEVENM LMKDDDGNKV ASEEPPKDYY ENFLADVLVD SPSTESPTDV 120 DSNSNGCADS EKEKADGSPH NDDADADDPV SKKRRRQLRN KDAAMRSRER RKMYVTDLEM 180 KSKYLEGECR RLGRLLQCCY AENHTLRLSL QMGNAYGRGV SGTKQESAVL LLELLLLGSL 240 LWFLDLTCLF TLPLMPHLLL LTLNQEQANK ALESVGPRAR GEASKMFLVL QSQSFIKTRR 300 CKASRTKMKE AFLALVVLGV NAGRGPYRMQ NILSADQT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	183	KRRRQLRNKDAAMRSRERRKMYVTDLEMKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	5e-15	bZIP family protein