PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G12593
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Nin-like
Protein Properties Length: 310aa    MW: 35364 Da    PI: 5.1186
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G12593genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK73.52.7e-23222272252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                   ++++l+dl++yF+l+i++A+ +L  c+Tv+KriCR++G++RWP Rkiks+
  Ro05_G12593 222 AANMKLDDLRAYFHLTIEEASEQLRFCPTVVKRICRKFGVSRWPARKIKSI 272
                  5799*********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MDSMANIPCA VVPYHDPYDH DAPDFSGGGG QSSFDQNPGL GFGNDAMPLP IWAPPPPIPF  60
SCCGCQVLRE IVHFNRNYVM RLEIHGRLGA ICHAIQESRY NSSDSSEPNY QTFDFCNKSI  120
GEVQKFLMQY CVERKVEGYV MQQDPLQAFY QTLCVGMYCE WDDILSYDEF IPDEDFDNDH  180
FIPPNSGRED EMEQPADEAS ANRKGKGPRL PRLSLAEQRE RAANMKLDDL RAYFHLTIEE  240
ASEQLRFCPT VVKRICRKFG VSRWPARKIK SIEKQISTLR PLLNSFSEST RVHVAAEIKR  300
LEKEVAQLVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.11e-13Nin-like family protein