PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G12575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24692.9 Da PI: 6.7942 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.5 | 1.3e-21 | 10 | 60 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ s rqvtfskRr+g++ KA+ S L daevavi+fs+tgklye+ss Ro05_G12575 10 KKIEDLSSRQVTFSKRRKGLFHKAKKWSSLYDAEVAVIVFSNTGKLYEFSS 60 68***********************************************96 PP | |||||||
2 | K-box | 48.3 | 4.2e-17 | 106 | 171 | 23 | 88 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 L+++i +L + +++G++L+ LslkeL +Le+qL++++ ++ ++K+ ll e+ +++ +e+++ Ro05_G12575 106 LLQEQIASLNSDCSRMMGKELDGLSLKELDELEKQLNQGILSVTKRKDALLWEEFYRSKSQEQQTM 171 699********************************************************9999875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MGPPRRIEIK KIEDLSSRQV TFSKRRKGLF HKAKKWSSLY DAEVAVIVFS NTGKLYEFSS 60 TRMDHILSRY NNEGAGFPIE SPEKRRHEPA AKHEPSSCGT LSAIVLLQEQ IASLNSDCSR 120 MMGKELDGLS LKELDELEKQ LNQGILSVTK RKDALLWEEF YRSKSQEQQT MEMPSFILEY 180 NSNPLDRLFY ASSSNDISGC SESERSDQHI DLSLHL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 8e-38 | MIKC_MADS family protein |