PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G12185

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 336aa MW: 37284.6 Da PI: 5.4333

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G12185	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.7	2e-08	278	313	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ Ro05_G12185 278 YKWPYPTEVDKLTLAQVTGLDQKQINNWFINQRKRH 313 3679*****************************885 PP
2	ELK	30.9	6.1e-11	233	254	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ L rKYsgy+++Lk+EFs Ro05_G12185 233 ELKNKLFRKYSGYISTLKHEFS 254 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MEELYGVVSS SSSTSTSTPG FFSSSDHYSS SVAMAPMQQL SDYYRSFEPF SAVIPASGSR 60 SGPMCFGSNP STVSDCVSVA AAAAGNQRRG EEVSCTAVNA KIASHPLYPN LLQAYIDCQK 120 VGAPPQIAHI LEEIRRESGE LSRTVGSTCM GVDPELDEFM ETYCDILLKY KSDLTKPFDE 180 AITFLNSMET QLNTLANSND APAGNSSDGE DLSGSGEIDV QDSDLQRTNE DHELKNKLFR 240 KYSGYISTLK HEFSKKKKKG KLPKDAKQIL TDWWNLHYKW PYPTEVDKLT LAQVTGLDQK 300 QINNWFINQR KRHWKPSENM QFAVMESLYG RSASGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	2e-89	TALE family protein