PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G12185 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | TALE | ||||||||
Protein Properties | Length: 336aa MW: 37284.6 Da PI: 5.4333 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.7 | 2e-08 | 278 | 313 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ Ro05_G12185 278 YKWPYPTEVDKLTLAQVTGLDQKQINNWFINQRKRH 313 3679*****************************885 PP | |||||||
2 | ELK | 30.9 | 6.1e-11 | 233 | 254 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ L rKYsgy+++Lk+EFs Ro05_G12185 233 ELKNKLFRKYSGYISTLKHEFS 254 9********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence |
MEELYGVVSS SSSTSTSTPG FFSSSDHYSS SVAMAPMQQL SDYYRSFEPF SAVIPASGSR 60 SGPMCFGSNP STVSDCVSVA AAAAGNQRRG EEVSCTAVNA KIASHPLYPN LLQAYIDCQK 120 VGAPPQIAHI LEEIRRESGE LSRTVGSTCM GVDPELDEFM ETYCDILLKY KSDLTKPFDE 180 AITFLNSMET QLNTLANSND APAGNSSDGE DLSGSGEIDV QDSDLQRTNE DHELKNKLFR 240 KYSGYISTLK HEFSKKKKKG KLPKDAKQIL TDWWNLHYKW PYPTEVDKLT LAQVTGLDQK 300 QINNWFINQR KRHWKPSENM QFAVMESLYG RSASGN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-89 | TALE family protein |