PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G12165

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Dof

Protein Properties

Length: 441aa MW: 48118.5 Da PI: 6.4999

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G12165	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	7.9e-40	155	215	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+ Ro05_G12165 155 HDQSLKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVA 215 68999*****************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
PKQILDLNRG IAEIFLEEES EWDPPVLDPQ VGVLFRYALY RGPKYSLSQY SSCPSPQSLS 60 LSPGTTLTAS VTSAFGDDHA VIYDVFTISI DGPSCPVPTT PTGIAAVGFQ ASRSVSQAEG 120 SIHEDQSPMD SSSPLSGDIL TCSRPMIERR LRPPHDQSLK CPRCDSTHTK FCYYNNYSLS 180 QPRYFCKTCR RYWTKGGTLR NIPVGGGCRK NKKVASKKPN EDHNASMNPN HLGSSSSSSH 240 NPTDLQLSFP DQMQFSHLNN LMLGAQGTGN PSFMDSRYGN INGMLENANP LRPIDFMESK 300 LEAIVGNARN YDFMGNGVDN LGMVGGLSNM GGGHGLESGF HGFCSSPFGS MSIDHHGNNN 360 GTNFMDSCQR LMLPYEANGD HHRHQNEIHD VKPNTKLLSL EWQDQGCSDA GKESSYGYLN 420 GLGSWTGVMN NYGSSATNSL V

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

PKQILDLNRG IAEIFLEEES EWDPPVLDPQ VGVLFRYALY RGPKYSLSQY SSCPSPQSLS  60
LSPGTTLTAS VTSAFGDDHA VIYDVFTISI DGPSCPVPTT PTGIAAVGFQ ASRSVSQAEG  120
SIHEDQSPMD SSSPLSGDIL TCSRPMIERR LRPPHDQSLK CPRCDSTHTK FCYYNNYSLS  180
QPRYFCKTCR RYWTKGGTLR NIPVGGGCRK NKKVASKKPN EDHNASMNPN HLGSSSSSSH  240
NPTDLQLSFP DQMQFSHLNN LMLGAQGTGN PSFMDSRYGN INGMLENANP LRPIDFMESK  300
LEAIVGNARN YDFMGNGVDN LGMVGGLSNM GGGHGLESGF HGFCSSPFGS MSIDHHGNNN  360
GTNFMDSCQR LMLPYEANGD HHRHQNEIHD VKPNTKLLSL EWQDQGCSDA GKESSYGYLN  420
GLGSWTGVMN NYGSSATNSL V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	4e-52	Dof family protein