PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G11952

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GATA

Protein Properties

Length: 633aa MW: 68879.7 Da PI: 4.8033

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G11952	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.4	1.5e-16	204	240	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Ro05_G11952 204 CTHCGTSSkcTPMMRRGPSGPRSLCNACGLFWANRGV 240 *********************************9997 PP
2	GATA	49.2	7.3e-16	486	522	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Ro05_G11952 486 CQHCGVSEsnTPAMRRGPAGPRTLCNACGLMWANKGT 522 *****999**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MYGHAQPMDM QNQIPAGEED DSAGAESIDN AHIHYEGHTL EDGGVVVHEA TSDDVYIHGG 60 NTDLDMAIPY EGSSQLTLSF RGQVYVFDSV TPDKVQAVLL LLGGSESSSG TQGVDMATQN 120 QRAITEFPTG CNQPHRAASL NRFRQKRKER CFDKKVRYSV RQEVALRMQR NKGQFTSSKK 180 SDGDYSWGTG QESGQDDSHA ETSCTHCGTS SKCTPMMRRG PSGPRSLCNA CGLFWANRGV 240 LREITKRPQG HSQTPAEQGE AEANDSDSGT AIIPAHNSPN VVPLSNGDNK ALPLQARPFE 300 ENVAGSFQME DDEGEYEDGG DDAMEEDEEV HASSVSVAER GRSTVTASRT SELTLSFEGE 360 VYVFPAVTPE KVQAVLLLLG GRAVPTGVPT VEVSYDQNTR GVGDTPKRSN LSRRIASLVR 420 FREKRKERCF DKKIRYTVRK EVAQRMHRKN GQFASLKENS GGSGWDSAQS CLQDGTPRTE 480 TVLRRCQHCG VSESNTPAMR RGPAGPRTLC NACGLMWANK GTLRDLSKGG RNLSMDHIEP 540 GTPLEIKPSI IESAFSGNQD GQGTPEDPSK SVIEGSNDAS VNPDVEDLHE TAEDLTNTLP 600 MGIVSSTNDD EQEPLLELTN TSDTDLDIPT NFD

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MYGHAQPMDM QNQIPAGEED DSAGAESIDN AHIHYEGHTL EDGGVVVHEA TSDDVYIHGG  60
NTDLDMAIPY EGSSQLTLSF RGQVYVFDSV TPDKVQAVLL LLGGSESSSG TQGVDMATQN  120
QRAITEFPTG CNQPHRAASL NRFRQKRKER CFDKKVRYSV RQEVALRMQR NKGQFTSSKK  180
SDGDYSWGTG QESGQDDSHA ETSCTHCGTS SKCTPMMRRG PSGPRSLCNA CGLFWANRGV  240
LREITKRPQG HSQTPAEQGE AEANDSDSGT AIIPAHNSPN VVPLSNGDNK ALPLQARPFE  300
ENVAGSFQME DDEGEYEDGG DDAMEEDEEV HASSVSVAER GRSTVTASRT SELTLSFEGE  360
VYVFPAVTPE KVQAVLLLLG GRAVPTGVPT VEVSYDQNTR GVGDTPKRSN LSRRIASLVR  420
FREKRKERCF DKKIRYTVRK EVAQRMHRKN GQFASLKENS GGSGWDSAQS CLQDGTPRTE  480
TVLRRCQHCG VSESNTPAMR RGPAGPRTLC NACGLMWANK GTLRDLSKGG RNLSMDHIEP  540
GTPLEIKPSI IESAFSGNQD GQGTPEDPSK SVIEGSNDAS VNPDVEDLHE TAEDLTNTLP  600
MGIVSSTNDD EQEPLLELTN TSDTDLDIPT NFD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	404	409	DTPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	1e-79	GATA family protein