PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G11820

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GATA

Protein Properties

Length: 538aa MW: 60019.4 Da PI: 7.4833

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G11820	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Ro05_G11820 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDYEDH 60 RVSRMKSMSI NKNKEVKLVK RKQHPDSVVV GADYSHGFRK VTDEDTSNRS SSGSAISNSE 120 SCAHFGSADA SDLTGPAQSM VWDSTVPSRK RTCVGRPKQS PVEKLTKDLY TILHEQQSSY 180 FSGSSEEDLL FESETPMVSV EIGHGSVLIR HPSSIVREEE SEASSLSVDN RQCHINEAYS 240 HSASLLVHNN KGVNMTSTVI GKMNNPAGQG MQQEPLKRDK SQHDNFQILG NHNSPLRHID 300 LNDILNYEEF MRQLTTEEQQ QLLKHLPPVD VKFPYSLKNM FDSPQFRENL TSFQQLLGEG 360 IFDISFPGAK TEDCKTLKRL ALSNSLKSKW VERYHLIKKC KTTSGKSVVS GSNFTTSSNF 420 RHVKRLRDSE TQSFPDVKIV MKSPKRVIMK GGYENKDIID YDGSCFSPRS LFALPPDGSS 480 LMLDSMSFVE ESSEQDLLLD VPSNGSFPQA ELLHPALSFG SQQASTSSSS IYPHLLHP

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDYEDH  60
RVSRMKSMSI NKNKEVKLVK RKQHPDSVVV GADYSHGFRK VTDEDTSNRS SSGSAISNSE  120
SCAHFGSADA SDLTGPAQSM VWDSTVPSRK RTCVGRPKQS PVEKLTKDLY TILHEQQSSY  180
FSGSSEEDLL FESETPMVSV EIGHGSVLIR HPSSIVREEE SEASSLSVDN RQCHINEAYS  240
HSASLLVHNN KGVNMTSTVI GKMNNPAGQG MQQEPLKRDK SQHDNFQILG NHNSPLRHID  300
LNDILNYEEF MRQLTTEEQQ QLLKHLPPVD VKFPYSLKNM FDSPQFRENL TSFQQLLGEG  360
IFDISFPGAK TEDCKTLKRL ALSNSLKSKW VERYHLIKKC KTTSGKSVVS GSNFTTSSNF  420
RHVKRLRDSE TQSFPDVKIV MKSPKRVIMK GGYENKDIID YDGSCFSPRS LFALPPDGSS  480
LMLDSMSFVE ESSEQDLLLD VPSNGSFPQA ELLHPALSFG SQQASTSSSS IYPHLLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-156	GATA family protein