PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11781
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 340aa    MW: 38012.9 Da    PI: 7.8059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11781genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20186236255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  Ro05_G11781 186 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDRAAFKLRG 236
                  7********.**********9...4334*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MEAALSLDMA ALDQVWALEL IKNHLLGEFS PMTKSSPVTE LSASSSASDL SRSQSGSSST  60
SQTSIEISDY LDNELFDFTS NPIPNDFFEF ETKPQVIDLT TPKSNYLTSQ NSFEFDSKPL  120
VTSTTSFFEF QHDLQMLNQT APKPVGSTRK PALSISLPNK TEWIQFSKSE KPQVQKTDPN  180
EEKKRHYRGV RQRPWGKYAA EIRDPNRRGS RVWLGTFDTA IEAAKAYDRA AFKLRGSKAI  240
LNFPLEAGKS EQQQPKAAAV VERKRRREED VKPAPLVVKK EKLTATVEAV SYIKDMPLTP  300
STWTAAFWDS DTDVKGIFNV PPLSPLSPHP AMGFSQLMVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263267RKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-69ERF family protein