PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G11760

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 316aa MW: 35339.5 Da PI: 8.3144

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G11760	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.9e-19	143	197	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Ro05_G11760 143 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 197 788899***********************************************98 PP
2	HD-ZIP_I/II	129.5	1.4e-41	143	232	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Ro05_G11760 143 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 232 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MMVEREDLGL SLSLSAFPHQ NHHHPNNNNN NTLQLNLTPS LVQASASSPH SGFNPQKPSW 60 NDALASSDRN SDTCRAGARS FLRGIDVNRL PSTADCEDVS SPNSTVSSVS GKRSEREANG 120 EDLDIDRDGS RGISDEEDGE TSRKKLRLSK DQSAILEESF KEHNTLNPKQ KLALAKQLGL 180 RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKR CCENLTEENR RLQKEVQELR ALKLSPQFYM 240 QMTPPTTLTM CPSCERVAVP PNSTSSSATV DPRAHHHPMV PIHHPRAIPI AAPWATASPI 300 PQQQQRPFDA FRGARS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	SRKKLRL
2	192	200	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	4e-97	HD-ZIP family protein