PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G10257

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 545aa MW: 60509.4 Da PI: 5.3384

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G10257	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.5e-30	255	314	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + gCpv+k+v+r+ ed +++++tYeg+Hnh+ Ro05_G10257 255 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpGCPVRKQVQRCLEDMSILITTYEGTHNHP 314 58************************999**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MGISTENEQK DLEIGLSLKI DHPPEQEEEE EEEDDNEEDE DIEEASAAEE QQEENNTEEE 60 PKAAAGEVDD DASVLLETTS LHENNMKTDQ ELCVLQMEMS RMKEENKVLR KVVEQTMKDY 120 YDLQMKFTAV HHQNNQNKDP QTFLSLHGND NDEADLPKSC IPKILDIRHR SPSPAREDDI 180 NEESQLGLSL RLHTNQFRDP REDRNKQELT SSSLASSVQH KLQRTEFAGI TTHVASQANR 240 KARVSVRARC ESATMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVSPGCPVR KQVQRCLEDM 300 SILITTYEGT HNHPLPVGAT AMASTASAAA ASFMLLDSSN HHLSDGSLPS SNFMTQASLP 360 NHNYYNTRHH MLNNHYPSSI SQQYSSSSSN FRTLNSLHHQ HHDPSKGIVL DLTNNLCDTT 420 TSTAMPSAGS SSHSSAPPGF NNWMMSGKPA NYHHNGGNSM MMMGNHRLLG NRRSSGEENM 480 TLPSSSALMA ENVSAIASDP KFRVAVAAAI TSLINNKENN TSTPPPSNNN NNSFGPRDNG 540 EKSDS

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MGISTENEQK DLEIGLSLKI DHPPEQEEEE EEEDDNEEDE DIEEASAAEE QQEENNTEEE  60
PKAAAGEVDD DASVLLETTS LHENNMKTDQ ELCVLQMEMS RMKEENKVLR KVVEQTMKDY  120
YDLQMKFTAV HHQNNQNKDP QTFLSLHGND NDEADLPKSC IPKILDIRHR SPSPAREDDI  180
NEESQLGLSL RLHTNQFRDP REDRNKQELT SSSLASSVQH KLQRTEFAGI TTHVASQANR  240
KARVSVRARC ESATMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVSPGCPVR KQVQRCLEDM  300
SILITTYEGT HNHPLPVGAT AMASTASAAA ASFMLLDSSN HHLSDGSLPS SNFMTQASLP  360
NHNYYNTRHH MLNNHYPSSI SQQYSSSSSN FRTLNSLHHQ HHDPSKGIVL DLTNNLCDTT  420
TSTAMPSAGS SSHSSAPPGF NNWMMSGKPA NYHHNGGNSM MMMGNHRLLG NRRSSGEENM  480
TLPSSSALMA ENVSAIASDP KFRVAVAAAI TSLINNKENN TSTPPPSNNN NNSFGPRDNG  540
EKSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	1e-73	WRKY family protein