PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G08626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 34817.5 Da PI: 9.4575 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 243 | 300 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++prsYY+C+s gCp++k+ver+ ed +++++tY g+H+h+ Ro05_G08626 243 DDYSWRKYGQKPIKGSPYPRSYYKCSSVrGCPARKHVERCLEDSTMLVVTYDGDHQHS 300 99************************988****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence |
MEKNSGDFLS MNPGLDFKVH QVAKTSLQHA HHLFACISDN NQERSVQEVS LIAEDAVKEF 60 RKLLKLLDGS MSSNHRRIRK GPLPKSHHVN QVDLMEISPN SCSSQTSTYD WAHQPFLVKQ 120 FNSTLQRDQA IASCDQSSVA LPSLIMGLNQ FSQNPSCTSL ISMAGSSIHT QIVRHSTSEL 180 TFRDGTSMFS SKRKSCGVKS EEDGTICLAS TGGCHCSKRR KLRIKRRIRV PAVSNKLADI 240 PPDDYSWRKY GQKPIKGSPY PRSYYKCSSV RGCPARKHVE RCLEDSTMLV VTYDGDHQHS 300 NFTFQAPALL N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 223 | 229 | RIKRRIR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 5e-49 | WRKY family protein |