PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G08609

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 397aa MW: 45938.3 Da PI: 6.7929

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G08609	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	3.1e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kk+++kk++l +vi++vd+yk+ePwdL++ k+ + +++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++ Ro05_G08609 7 VPPGFRFHPTDEELVDYYLRKKIASKKIDL-DVIRDVDLYKIEPWDLQElcKIGTeDQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYI- 102 69**************************.9***********954555552555**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg++ktLvfykgrap+g+k+dW+mheyrle Ro05_G08609 103 RHNLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 899***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKKIDLDVIR DVDLYKIEPW DLQELCKIGT 60 EDQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHNLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNES GPPQASLFTF SSVYNISSRS RFLAEEGWVV CRVFKKRLAT 180 VRRVGDYESP CWYDPGSSMS SFMPELDSPR RNMIPHPAYT TSSSSYHNQL YSNCKQELDH 240 HLQYNTMPVP PHPDSFLQLP QLESPKVAQY GTYDPHRNNG CHVMPSPTFR PEQLQQMNHQ 300 NLIMDSPSLL YNDNSLDDQV TDWRVLDKFV ASQLSHEQLE ASKETTTNYS NEAVYDPLGD 360 EVHINMGANE SKRSENIVGQ DYAASTSTSS CQVDLWK

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MNTFSHVPPG FRFHPTDEEL VDYYLRKKIA SKKIDLDVIR DVDLYKIEPW DLQELCKIGT  60
EDQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YIRHNLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNES GPPQASLFTF SSVYNISSRS RFLAEEGWVV CRVFKKRLAT  180
VRRVGDYESP CWYDPGSSMS SFMPELDSPR RNMIPHPAYT TSSSSYHNQL YSNCKQELDH  240
HLQYNTMPVP PHPDSFLQLP QLESPKVAQY GTYDPHRNNG CHVMPSPTFR PEQLQQMNHQ  300
NLIMDSPSLL YNDNSLDDQV TDWRVLDKFV ASQLSHEQLE ASKETTTNYS NEAVYDPLGD  360
EVHINMGANE SKRSENIVGQ DYAASTSTSS CQVDLWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-143	NAC family protein