PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G07394

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 357aa MW: 39980.5 Da PI: 4.7555

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G07394	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.5	2.6e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL +kveg ++el evi+ +d+yk++Pw+Lp k + ++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v++ + Ro05_G07394 6 LPPGFRFHPTDEELVGYYLSRKVEGLQFEL-EVIPVIDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVC-Q 101 79**************************.99**********95334455788**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g +ktLvfy+grap g +tdW+mheyrl Ro05_G07394 102 SSVTGYRKTLVFYRGRAPLGDRTDWIMHEYRL 133 999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MGGASLPPGF RFHPTDEELV GYYLSRKVEG LQFELEVIPV IDLYKFDPWE LPEKSFLPRR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL 120 GDRTDWIMHE YRLNDDLAQG SPGHQGVFAL CRVVKKNDKA NDSNGEPKAP KRVGTSSSNV 180 DLTSNEPLSI SAGMSSQVNY ESRHSSHTTS PYEATPTAEF EPASRDANPA DFWVSPDLIL 240 DSSKDYPQLQ GAMPNYFPQC EFPSPMTPWQ SYEQTEISPS SSYSNFGDFQ MADDLSQMAS 300 MSPFSGHTDY MGYCGNEGMQ FEGSDGQAPI CRQVSADGSL GELGGLWLQE DNMVIVI

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MGGASLPPGF RFHPTDEELV GYYLSRKVEG LQFELEVIPV IDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL  120
GDRTDWIMHE YRLNDDLAQG SPGHQGVFAL CRVVKKNDKA NDSNGEPKAP KRVGTSSSNV  180
DLTSNEPLSI SAGMSSQVNY ESRHSSHTTS PYEATPTAEF EPASRDANPA DFWVSPDLIL  240
DSSKDYPQLQ GAMPNYFPQC EFPSPMTPWQ SYEQTEISPS SSYSNFGDFQ MADDLSQMAS  300
MSPFSGHTDY MGYCGNEGMQ FEGSDGQAPI CRQVSADGSL GELGGLWLQE DNMVIVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-107	NAC family protein