PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G07331

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C3H

Protein Properties

Length: 361aa MW: 39889.3 Da PI: 7.7363

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G07331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.3	3.6e-10	107	131	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Ro05_G07331 107 FKTKLCCKFRA-GTCPYVTNCNFAHS 131 69*******.***********8 PP
2	zf-CCCH	18.6	3.4e-06	180	205	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Ro05_G07331 180 YKGRHCKKFYTEEGCPYGDNCTFLHD 205 78888********************7 PP
3	zf-CCCH	43.5	5.4e-14	242	267	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Ro05_G07331 242 WKTRICNKWELTGYCPFGSKCHFAHG 267 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MLRMDKKWHQ STEPLAMDYG RETNAVQVIT GNGGGDMWPG DQAVWATEDE YRVWNNGDAL 60 GDTMSHSNYD QRQSQSRSGS DPPNKKSRNS QDATSSNRSK AIGKMFFKTK LCCKFRAGTC 120 PYVTNCNFAH SIEELRRPPP NWQEIVAAHE EEKAVSSEPR EEFQIPIVTT GYGVETQRSY 180 KGRHCKKFYT EEGCPYGDNC TFLHDESSKN RESVAISLGP GGYGGAAAAA AAGGASNKPS 240 NWKTRICNKW ELTGYCPFGS KCHFAHGVAE LHRYGGGLVD GEIRDSSSIP LDNKQGGVPL 300 KTPADNVVVS VPIVPHSDLY HGVPSQRSSI VSQRPGQRAH QKWKGPDKIS RIYGDWIDDI 360 E

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MLRMDKKWHQ STEPLAMDYG RETNAVQVIT GNGGGDMWPG DQAVWATEDE YRVWNNGDAL  60
GDTMSHSNYD QRQSQSRSGS DPPNKKSRNS QDATSSNRSK AIGKMFFKTK LCCKFRAGTC  120
PYVTNCNFAH SIEELRRPPP NWQEIVAAHE EEKAVSSEPR EEFQIPIVTT GYGVETQRSY  180
KGRHCKKFYT EEGCPYGDNC TFLHDESSKN RESVAISLGP GGYGGAAAAA AAGGASNKPS  240
NWKTRICNKW ELTGYCPFGS KCHFAHGVAE LHRYGGGLVD GEIRDSSSIP LDNKQGGVPL  300
KTPADNVVVS VPIVPHSDLY HGVPSQRSSI VSQRPGQRAH QKWKGPDKIS RIYGDWIDDI  360
E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-124	C3H family protein