PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G07318

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 337aa MW: 37700.5 Da PI: 6.5085

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G07318	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.6e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd++lvd+++++G g+W++ ++ g++R++k+c++rw +yl Ro05_G07318 15 KGPWTTEEDQKLVDYINRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	57.3	3.6e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l Ro05_G07318 68 RGKFSEEEEQVIINLHAVLGNK-WSKIATHLP-GRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGRSPCCDDQ SDLKKGPWTT EEDQKLVDYI NRHGHGSWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEEQVII NLHAVLGNKW SKIATHLPGR TDNEIKNYWN THLRKKLLQM 120 GLDPNTHKPR TDLNHLLNLS QLLSTVSVGN MMSTTPWDNA LRLQASAAQL AKMQLLQNLY 180 MQVTNPSITA PDIDMKTSTS LFGSQNINLF GGNLNGASTM LRGQEWNPDS IPGAPNELNT 240 IFNSLEGFEG LVSNINNNVM SSCYDLQIFQ NQFPELVSAS PGGSTINNQI ESTSTSDVPA 300 AGHSSPTSIF EAWEKLMDDD TSETYWKDIL QSFICLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-85	MYB family protein